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Detailed information on CNT30360227


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUI4|PSAL_ARATH, E-value = 3e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712228Lactuca sativaGlycine max53.2156.9777.59290forward
CNT30620323Lactuca sativaCajanus cajan45.513.8879.44248forward

Expression of CNT30360227

Peptides detected in this lncRNA

>peptide 1 (36 aa)
PYDPRDPTKEEPAGKFGPTVSCLKLIRLLLPPGQSQ*

>peptide 2 (94 aa)
MLKITTSPPAASEPAAPAYSVFLSGPAFTNGPTRKNPWASPTSIPRSSGLTAVRYPGRFERYHAINGLDVTGVSRLLWPFLSIHLTLSLSILNL*

Sequence

>CNT30360227
GCCCATATGACCCCCGAGATCCCACCAAAGAAGAACCCGCCGGTAAATTTGGCCCAACCGTCAGCTGTTTGAAGTTGATCCGGCTCCTTCTTCCTCCCGG
TCAAAGTCAATGACGGGGCAATCGATGGCTCACCCTCTTTAAACGAAGCGATCCCGTACATCGTCAAGCAGATGCTTAAGATCACCACTAGCCCACCAGC
AGCTAGTGAGCCAGCCGCACCAGCATACTCTGTGTTCCTTAGTGGGCCTGCTTTCACAAATGGGCCCACTAGAAAGAACCCATGGGCTAGCCCGACCTCG
ATACCACGTAGTAGTGGGTTGACAGCTGTGCGGTATCCCGGAAGGTTTGAAAGGTACCATGCAATCAATGGGCTTGATGTGACGGGTGTCTCGAGGCTGC
TGTGGCCATTTTTGTCAATTCACTTAACACTCTCTCTCTCTATTTTGAATCTATAATTCAGAGGCCACAGATCGAATGGTTATAGTAGGGGAGAGACACA
CACACAGTGACTTGGCAAGCTGAAAATCTTTTTATCGTAAAGTTG