CANTATAdb - search

Detailed information on CNT30360185

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT3|PSBA_ATRBE, E-value = 1e-154

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692810	Lactuca sativa	Oryza sativa	100.7	57.12	89.34	722	forward
CNT30378681	Lactuca sativa	Arabidopsis thaliana	92.89	69.16	91.29	666	forward
CNT30196112	Lactuca sativa	Pisum sativum	59.41	92.01	88.97	426	forward
CNT30300480	Lactuca sativa	Triticum aestivum	100	54.73	89.96	717	forward
CNT3089384	Lactuca sativa	Vigna radiata	74.9	66.13	92.92	537	forward
CNT30540528	Lactuca sativa	Brassica napus	99.86	59.62	92.04	716	forward
CNT30555706	Lactuca sativa	Oryza glaberrima	75.45	78.98	92.61	541	forward
CNT30145403	Lactuca sativa	Medicago truncatula	35.29	94.05	96.05	253	forward
CNT3018289	Lactuca sativa	Zea mays	96.09	26.55	89.4	689	forward
CNT30626343	Lactuca sativa	Daucus carota	53.14	93.61	97.38	381	forward
CNT30684658	Lactuca sativa	Triticum urartu	43.38	44.81	94.53	311	forward
CNT3058320	Lactuca sativa	Amborella trichopoda	92.19	95.11	88.35	661	forward
CNT30147990	Lactuca sativa	Brachypodium distachyon	66.39	31.44	89.29	476	forward

Expression of CNT30360185

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSGYDIISFFFLTESVTFISRFIFCGFPDQTRGYQRTMHSTK*

>peptide 2 (42 aa)
MSITFMHNFHTKVSTVNDISPSINYTALTINYRLVESHSADT*

Sequence

>CNT30360185
CAATAAGACCAAAGTCTTATCCATTTGTAGATGGAGCTTCGATAGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACC
AAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACCGATTGGTTGAAAGCCATAGTGCTGATACCTAAAGCA
GTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAAC
CATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGT
TACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG
AATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAG
CTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAA
GAAGTGTAGAAATAATA