Detailed information on CNT30360105


BLAST search results

BLAST vs Swiss-Prot:
sp|P12360|CB11_SOLLC, E-value = 3e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375337Lactuca sativaArabidopsis thaliana7.3920.589.2365forward
CNT30405492Lactuca sativaBeta vulgaris6.0222.2790.5753forward
CNT30525458Lactuca sativaPhaseolus vulgaris26.0212.6279.91229forward
CNT30629770Lactuca sativaVigna unguiculata8.0729.5891.5571forward
CNT30567058Lactuca sativaActinidia chinensis13.1832.2281.9116forward
CNT30236705Lactuca sativaBrassica oleracea17.6132.9180.65155forward
CNT30609040Lactuca sativaGossypium raimondii21.3640.8781.91188forward
CNT3034379Lactuca sativaTheobroma cacao21.0223.7279.46185forward
CNT3037808Lactuca sativaCucumis melo28.0733.8880.57247forward

Expression of CNT30360105

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MTYYCKHSPSAVNELRLFESFKVRWSWLSGHPLGGHGNPRCVGGNTGKWHSSRES*

>peptide 2 (50 aa)
MRILELKSKHACCTLIWENSFRNNDISNVVVPWVSQMSCQVLQGSGFRVF*

>peptide 3 (40 aa)
MAPGSLGMLLARRAGLPILVLLPNCPILMLQVTKSQAANL*

>peptide 4 (29 aa)
MKFYKAFTYENFGAQKQACMLHINLGKFL*

>peptide 5 (82 aa)
MSSDSLNLSRYGGRGCPGIHSADMEIRDALVVTPESGTAVANLDLEEERSEGRPTAGMPQLINVLEAIPRRMYESGNGNGGF*

>peptide 6 (59 aa)
MEMNSIAKIVGRVPHGTGFPRYVACPPGRAAHSCAFTQLPNPNASGNKIPGCKFVTCYK*

>peptide 7 (29 aa)
MYWKPFPEECMNLEMEMEDFSGGGGCGCG*

Sequence

>CNT30360105
CTAATATAATATAAGTTCATTTGATTACAAGATGAAGTTTTACAAGGCCTTTACATATGAGAATTTTGGAGCTCAAAAGCAAGCATGCATGTTGCACATT
AATTTGGGAAAATTCCTTTAGGAATAATGACATCTCCAATGTTGTTGTGCCATGGGTCAGCCAAATGAGTTGCCAAGTTCTCCAAGGGTCCGGTTTTAGG
GTCTTTTGAGTAGCCTAATGGGTCAAAAGCACCACCGGGGTACTTCTTCTTTTCTGTGTCTTTTTCCATACTCCTTTGGTGTTCTACGAATGCAATGGAG
ATGAATTCGATAGCCAAGATTGTGGGTAGGGTACCCCATGGCACCGGGTTCCCTAGGTATGTTGCTTGCCCGCCGGGCAGGGCTGCCCATTCTTGTGCTT
TTACCCAATTGCCCAATCCTAATGCTTCAGGTAACAAAATCCCAGGCTGCAAATTTGTAACATGTTATAAATAATAAGTGTAACTTGTATATGTATATAT
ATGATATGATATATCAAACATATAACACTAATCATTGCTATTTTTTTTTTCGTTAATGAATGACTTACTACTGCAAGCATAGCCCATCTGCAGTGAATGA
GCTCCGACTCTTTGAATCTTTCAAGGTACGGTGGTCGTGGTTGTCCGGGCATCCACTCGGCGGACATGGAAATCCGAGATGCGTTGGTGGTAACACCGGA
AAGTGGCACAGCAGTCGCGAATCTTGATTTGGAAGAGGAGAGAAGCGAGGGGCGGCCTACGGCGGGGATGCCGCAGCTCATTAATGTATTGGAAGCCATT
CCCAGAAGAATGTATGAATCTGGAAATGGAAATGGAGGATTTTAGTGGTGGTGGTGGTTGCGGTTGTGGATGAATAATGG