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Detailed information on CNT30360078


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1SU99|H2B3_MEDTR, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674774Lactuca sativaSetaria viridis16.5422.0987.79131forward
CNT30523142Lactuca sativaSetaria italica15.423.4686.07122forward
CNT30315505Lactuca sativaCorylus avellana16.1628.0189.06128forward
CNT30379403Lactuca sativaManihot esculenta19.727.7685.9156forward
CNT30526697Lactuca sativaPhaseolus vulgaris30.8192.7884.84244forward
CNT30200173Lactuca sativaPisum sativum32.5843.2282.95258forward
CNT30292924Lactuca sativaTriticum aestivum15.422.6386.89122forward
CNT30219691Lactuca sativaHordeum vulgare10.9834.9485.0687forward
CNT30395424Lactuca sativaTriticum turgidum15.0324.7484.87119forward
CNT30586986Lactuca sativaMusa acuminata14.933.3386.44118forward
CNT30553165Lactuca sativaOryza glaberrima15.426.5286.07122forward
CNT30172842Lactuca sativaTrifolium pratense32.4546.3982.88257forward
CNT30437440Lactuca sativaAegilops tauschii15.0323.2985.71119forward
CNT30246240Lactuca sativaAvena sativa15.0324.7484.87119forward
CNT30447591Lactuca sativaSaccharum spontaneum15.0321.8384.87119forward
CNT30131583Lactuca sativaLolium perenne13.7625.7185.32109forward
CNT30688994Lactuca sativaTriticum urartu14.272085.84113forward
CNT30346527Lactuca sativaEragrostis tef13.8952.1385.45110forward
CNT30596761Lactuca sativaOryza meridionalis20.0820.1382.39159forward
CNT30369169Lactuca sativaOryza glumipatula15.421.2984.43122forward
CNT30319826Lactuca sativaAsparagus officinalis15.420.7589.34122forward
CNT30100801Lactuca sativaOryza rufipogon16.5420.2286.26131forward
CNT30577496Lactuca sativaOryza barthii20.0829.7882.39159forward
CNT30174435Lactuca sativaVigna angularis32.8338.8183.85260forward

Expression of CNT30360078

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLSQLPGKYKSDCSLNLPRRQSVLLVVPCKLRCLLSELLKNVVDE*

>peptide 2 (46 aa)
MRLLGVSSPPWASSPPVPSQPGPFPLLVSFRQLPWVPLIRLEGRWK*

Sequence

>CNT30360078
AATTTCAGAACTTTTCACCTAGAAGGTAATTACATCAGGAATCCCAAAAACCAACGAAAACCAGATTACTACATATACTAACAGATCAAGACAATCTAAC
CGCTAGTGAACTTTGTCACAGCCTTGGTACCTTCAGACACAGCATGCTTAGCCAACTCCCCGGGAAGTACAAGTCTGACTGCAGTTTGAATCTCCCTCGA
AGACAGAGTGTTCTTCTTGTTGTACCTTGCAAGCTTAGATGCCTCCTGAGCGAGCTTCTCAAAAATGTCGTTGATGAATGAGTTCATGATGCCCATTGCC
TTACTAGAGATACCAATGTCAGGGTGAACCTGCTTCAAAACCTTAAAGATGTAGATCTTGTAGCCAACTCCCCGGGAAGTACAAGTCTGACTGCAGTTTG
AATCTCCCTCGAAGACAGAGTGTTCTTCTTGTTGTACCTTGCAAGCTTAGATGCCTCCTGAGCGAGCTTCTCGAAAATGTCGTTGATGAATGAGTTCATG
ATGCCCATTGCCTTACTAGAGATACCAATGTCAGGGTGAACCTGCTTCAAAACCTTAAAGATGTAGATCTTGTAGGTCTCGACTGATTTCTTGTGTCTCT
TCTTCTTCTTATCTGCTCCGGCAGCCGATGCGTCTTTTGGGAGTTTCTTCTCCGCCTTGGGCTTCTTCTCCGCCGGTGCCTTCTCAGCCGGGGCCTTTTC
CGCTACTGGTTTCTTTCCGGCAGCTGCCTTGGGTGCCATTGATACGGTTGGAGGGAAGATGGAAATAGAGAAAATGTGTTTGTAGTTGATGA