Detailed information on CNT30360010


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT003887, E-value = 9e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618958Lactuca sativaSesamum indicum21.884.2290.64235forward
CNT3020650Lactuca sativaCitrullus lanatus21.5113.2892.64231forward
CNT30730408Lactuca sativaCorchorus capsularis21.5148.8495.24231forward
CNT30632297Lactuca sativaVigna unguiculata20.0212.1684.65215forward
CNT30201085Lactuca sativaPisum sativum20.0210.6490.23215forward
CNT30194121Lactuca sativaSecale cereale19.7423.6989.15212forward
CNT30219998Lactuca sativaHordeum vulgare11.4537.2787.8123forward
CNT30511784Lactuca sativaSolanum lycopersicum15.8325.8895.29170forward
CNT30445979Lactuca sativaSaccharum spontaneum19.7453.9489.62212forward
CNT30232528Lactuca sativaAnanas comosus21.6911.7791.42233forward
CNT30217417Lactuca sativaKalanchoe fedtschenkoi21.5149.3690.04231forward
CNT30655371Lactuca sativaRosa chinensis21.518.3784.85231forward
CNT30627898Lactuca sativaDaucus carota21.887.6394.47235forward
CNT30369168Lactuca sativaOryza glumipatula9.2227.1286.8799forward
CNT30430934Lactuca sativaPapaver somniferum20.023.2987.44215forward
CNT3025593Lactuca sativaPopulus trichocarpa21.6932.2792.7233forward
CNT30332506Lactuca sativaDioscorea rotundata19.3722.8385.1208forward
CNT30103542Lactuca sativaOryza rufipogon19.7429.990.09212forward
CNT30114189Lactuca sativaFicus carica21.515.8687.01231forward

Expression of CNT30360010

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRFNIITRSKCYSLFPILSGLVEPSLRNFRIPLPNGL*

>peptide 2 (55 aa)
MIWKSIRGKCSDLLRHSHEALNGPFGSSKTLSDFRLIQKLLFVQPSIFQISIKSY*

Sequence

>CNT30360010
TTTAGCTATTGTTCTTGAGAAATGACCCAGTCTAGCCCATTCCTCGAATGAAGTTTTTATGTGATCCCTATCTACCAAAATTTTTACTTCTGGTTCCGGC
GAACGAATAATCATTGAGTCCTCCTCTTTCCGGACAACACATACAAAGAGACCCGCCAACAGTCAAATAATTAGTGAATCTCGGAGAGATATTTCTATTA
TATAATTAGTTTCTTTCTCTTCTAGTTTTCTATCTCCCATCTATCTATTTTCTTTAGTTATTCACTAGAGCAATTATGATCTGGAAGTCGATCCGGGGCA
AGTGTTCGGATTTATTAAGACATAGCCATGAGGCGCTCAACGGACCTTTTGGATCTTCTAAAACCCTTTCTGACTTTAGATTGATACAAAAACTACTTTT
TGTGCAACCTAGTATATTTCAGATCTCAATTAAAAGTTATTAGATGGAGCTGCTTCATGTTTTTTAGATAGTACTATTACTCTATTCCAAATCACGCGAG
CAGCCATTAGCCATTACTAAGAAATTTTCATATATTCATTGATTCGAAGTATTTTTTATTTGATTAGTTTTAATCGTCTTTTTTTTTAATAGAAAAAAAG
AAAGACAATTAAAAAATAGATTTTGTAAGCTACCCATGTATCCTTTATTCGTATGAAATACCATACGAAATAGAACGTTTAGAATGGATATAAAGAAATT
CTTTGATTGGTTCTTCCCAAAGGAATGATCTATTTTATTTGACTGATGGGGCCAACAAACAATTAATTATAACAAAAAAATATCTAAAACAATCTAAATT
AGAAATTCAATAATAACTAAAATAAAGAAAAGGGTATCGTCTTTTATTCGAAACGTCTAGTGATCTTCAACCAATTATGCGCTTCAATATAATTACCAGG
AGTAAGTGCTATAGCCTGTTTCCAATACTCAGCGGCTTGGTCGAACCAAGCCTCCGCAATTTCAGAATCCCCCTGCCGAATGGCCTATAGTCGCACGTAA
TGACAGATCACGGCCATATTATTAAAAGCTTGTGGTAAGAATGGGTTTCGTTCGAGAGCTCGAAAATAATATTC