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Detailed information on CNT30359977


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXV8|YCF3_HELAN, E-value = 3e-27

BLAST vs NONCODE:
NONCQUT003887, E-value = 8e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549732Lactuca sativaIpomoea triloba11.9957.3787.38214reverse complement
CNT30618959Lactuca sativaSesamum indicum36.0810.2384.94644forward
CNT30632448Lactuca sativaVigna unguiculata15.5735.6482.37278forward
CNT30202140Lactuca sativaPisum sativum12.3220.3588.64220forward
CNT3047566Lactuca sativaPrunus dulcis35.1332.585.01627forward
CNT30589320Lactuca sativaMusa acuminata25.1592.3983.3449forward
CNT30598583Lactuca sativaFraxinus excelsior14.5726.187.31260forward
CNT30231162Lactuca sativaAnanas comosus8.1225.8981.38145forward
CNT30214788Lactuca sativaHelianthus annuus17.98100.6395.33321forward
CNT30103641Lactuca sativaOryza rufipogon11.2629.2288.56201forward
CNT30558183Lactuca sativaPanicum hallii3.2522.3991.3858reverse complement

Expression of CNT30359977

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MRFNIITRSKCYSLFPILSGLVEPSLRNFRIPLPNGLFSPVGIGGLIPSLRTVLESFLPHTARQSTLFVPHLNLPYLTE*

>peptide 2 (55 aa)
MIWKSIRGKCSDLLRHSHEALNGPFGSSKTLSDFRLIQKLLFVQPSIFQISIKSY*

Sequence

>CNT30359977
CCAGTCTAGCCCATTCCTCGAATGAAGTTTTTATGTGATCCCTATCTACCAAAATTTTTACTTCTGGTTCCGGCGAACGAATAATCATTGAGTCCTCCTC
TTTCCGGACAACACATACAAAGAGACCCGCCAACAGTCAAATAATTAGTGAATCTCGGAGAGATATTTCTATTATATAATTAGTTTCTTTCTCTTCTAGT
TTTCTATCTCCCATCTATCTATTTTCTTTAGTTATTCACTAGAGCAATTATGATCTGGAAGTCGATCCGGGGCAAGTGTTCGGATTTATTAAGACATAGC
CATGAGGCGCTCAACGGACCTTTTGGATCTTCTAAAACCCTTTCTGACTTTAGATTGATACAAAAACTACTTTTTGTGCAACCTAGTATATTTCAGATCT
CAATTAAAAGTTATTAGATGGAGCTGCTTCATGTTTTTTAGATAGTACTATTACTCTATTCCAAATCACGCGAGCAGCCATTAGCCATTACTAAGAAATT
TTCATATATTCATTGATTCGAAGTATTTTTTATTTGATTAGTTTTAATCGTCTTTTTTTTTAATAGAAAAAAAGAAAGACAATTAAAAAATAGATTTTGT
AAGCTACCCATGTATCCTTTATTCGTATGAAATACCATACGAAATAGAACGTTTAGAATGGATATAAAGAAATTCTTTGATTGGTTCTTCCCAAAGGAAT
GATCTATTTTATTTGACTGATGGGGCCAACAAACAATTAATTATAACAAAAAAATATCTAAAACAATCTAAATTAGAAATTCAATAATAACTAAAATAAA
GAAAAGGGTATCGTCTTTTATTCGAAACGTCTAGTGATCTTCAACCAATTATGCGCTTCAATATAATTACCAGGAGTAAGTGCTATAGCCTGTTTCCAAT
ACTCAGCGGCTTGGTCGAACCAAGCCTCCGCAATTTCAGAATCCCCCTGCCGAATGGCCTGTTCTCCCCGGTCGGAATAGGTGGGTTAATTCCTTCCCTT
AGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTCGGCAGTCAACTCTTTTTGTACCCCATTTGAATCTACCATATCTAACTGAATAAGATTTCTCGT
AGATCTATTCCATTTTTCGGGTTAACGAAAAGAAGTTAATAAAATGAGTTTCAAACTTAAATCTTAAGTTTGGATTAAAAATCCGGTTTATTTTAGTTTT
ATCTTTTCTCCCACCTTCAGAAGAATAAAACATAGACATTTCGCCTATCATTACAATTTTCTGAAAGGTAACTATCTCAGTTTCATATCATATAGAAATT
TATATAGAATTTTTGAAAAAGACTTTCGAAAGGAAAGACTTACTATCTTTGGGATCTGATCCTACACCGCTGCTCAATACCTTAGTGGATCGACTCTATT
ACATAAGTGGATTCCTAACGTTTTTCTCACATCATGACATAAGTAAGCAGTTATTATTGTATCGGCCCAAAACCTCGCTAATTGATCTTTACGGTGCTTA
CTCTATCAATTAGATCCTTTACCCATAGAATAAAACAGCTAGGCATATCTATTTCTTCATATTTCAACTTCTATGAAGTTTCTTTTCTACAGCTGATAAA
AATCGTTGTTTTAGACGATGCATATGTAGAAAGCCCAGTTTTCTAGTATTTACTAGCGAATTTGATCTTTCTTTACTTTTTTCTTTCTATAGCGGAGATA
GTCGCACGTAATGACAGATCACGGCCATATTATTAAAAGCTTGTGGTAAGAATGGGTTTCGTTCGAGAGCTCGAAAATAATATTC