CANTATAdb - search

Detailed information on CNT30359901

BLAST search results

BLAST vs Swiss-Prot:
sp|Q41385|PSAL_SPIOL, E-value = 6e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672902	Lactuca sativa	Setaria viridis	8.7	21.07	88.14	59	forward
CNT30516757	Lactuca sativa	Juglans regia	15.04	20.61	84.31	102	forward
CNT30507460	Lactuca sativa	Nicotiana attenuata	14.9	33.33	82.18	101	forward
CNT30709939	Lactuca sativa	Glycine max	12.39	25.45	85.71	84	forward
CNT3042792	Lactuca sativa	Prunus dulcis	12.54	23.04	85.88	85	forward
CNT30292923	Lactuca sativa	Triticum aestivum	10.47	31.14	90.14	71	forward
CNT30560479	Lactuca sativa	Actinidia chinensis	34.96	22.51	80.59	237	forward
CNT3084712	Lactuca sativa	Vigna radiata	12.54	30.04	85.88	85	forward
CNT3075006	Lactuca sativa	Brassica juncea	21.53	32.44	81.51	146	forward
CNT30261201	Lactuca sativa	Brassica rapa	28.61	21.85	80.41	194	forward
CNT30154501	Lactuca sativa	Prunus persica	12.54	27.24	85.88	85	forward
CNT3031830	Lactuca sativa	Theobroma cacao	12.98	24.11	86.36	88	forward
CNT3037642	Lactuca sativa	Cucumis melo	13.13	33.58	87.64	89	forward

Expression of CNT30359901

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MLKITTSPPAASEPAAPAYSVFLSGPAFTNGPTRKNPWASPTSIPRSSGLTAVRYHAINGLDVTGVSRLPMNGSPLMGWITW*

>peptide 2 (78 aa)
LQNIITSINIQLPIFSHPKKHKLTFHLLNIIRKVKYIKKIKSPYDPRDPTKEEPAGKFGPTVSCLKLIRLLLPPGQSQ*

Sequence

>CNT30359901
CTTCAAAATATCATCACATCCATTAATATACAACTTCCCATATTTAGCCATCCAAAAAAACACAAATTAACCTTTCACTTACTTAACATAATAAGGAAGG
TCAAGTACATAAAGAAGATAAAAAGCCCATATGACCCCCGAGATCCCACCAAAGAAGAACCCGCCGGTAAATTTGGCCCAACCGTCAGCTGTTTGAAGTT
GATCCGGCTCCTTCTTCCTCCCGGTCAAAGTCAATGACGGGGCAATCGATGGCTCACCCTCTTTAAACGAAGCGATCCCGTACATCGTCAAGCAGATGCT
TAAGATCACCACTAGCCCACCAGCAGCTAGTGAGCCAGCCGCACCAGCATACTCTGTGTTCCTTAGTGGGCCTGCTTTCACAAATGGGCCCACTAGAAAG
AACCCATGGGCTAGCCCGACCTCGATACCACGTAGTAGTGGGTTGACAGCTGTGCGGTACCATGCAATCAATGGGCTTGATGTGACGGGTGTCTCGAGGC
TTCCGATGAATGGGTCGCCGTTGATGGGCTGGATCACTTGGTAATTGGGCTGCATAGTACATCAAATCAAAATAACCTTTTAAAATCCTTATTGATTTTA
CATCATAAGATTTTATTGTTTAATCAATTAAGGTGACATTTAGAATATTTTACTAATGATCAAACAACACAAATTCTA