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Detailed information on CNT30359771


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 1e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Lactuca sativaSetaria viridis60.2975.8195.87630forward
CNT30641383Lactuca sativaNymphaea colorata88.7129.6793.53927forward
CNT30378673Lactuca sativaArabidopsis thaliana68.3357.2698.6714reverse complement
CNT30283003Lactuca sativaChenopodium quinoa82.3990.1697.91861reverse complement
CNT3089926Lactuca sativaSolanum tuberosum33.4915.8298350reverse complement
CNT30219690Lactuca sativaHordeum vulgare61.8294.3195.51646reverse complement
CNT30543266Lactuca sativaBrassica napus64.7824.9498.67677forward
CNT30147396Lactuca sativaMedicago truncatula85.9330.1899898forward
CNT30140161Lactuca sativaLolium perenne92.0628.2697.19962forward
CNT30715685Lactuca sativaMalus domestica golden42.8736.8186.38448reverse complement
CNT30346087Lactuca sativaEragrostis tef80.7781.6297.16844forward
CNT30595568Lactuca sativaOryza meridionalis27.6674.4892.39289reverse complement
CNT30429739Lactuca sativaPapaver somniferum78.7625.5894.05823forward
CNT3056076Lactuca sativaAmborella trichopoda76.8434.8893.4803forward
CNT3038324Lactuca sativaCucumis melo82.245.5598.02859reverse complement
CNT30331625Lactuca sativaDioscorea rotundata22.3973.5896.58234forward
CNT30151167Lactuca sativaBrachypodium distachyon11.3920.3898.32119reverse complement
CNT3099709Lactuca sativaOryza rufipogon35.517.0499.46371forward
CNT30499372Lactuca sativaDigitaria exilis92.0628.397.19962forward
CNT30557400Lactuca sativaPanicum hallii62.6847.7497.1655forward
CNT3039925Lactuca sativaMarchantia polymorpha31.2965.9395.41327forward

Expression of CNT30359771

Peptides detected in this lncRNA

>peptide 1 (56 aa)
STHLLTAFEALSSVRFSFRKSRSASRVYKPFSFKCSPFESSVGAFSLLIRVGVARE*

Sequence

>CNT30359771
GCTCCACGCACCTGCTAACAGCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAAAGTCTCGTTCAGCGTCACGAGTCTACAAGCCTTTCTCATT
TAAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGGGGTCGCGAGAGAGTAGAGCGTACCGCCCTGCCATAGTCGCGAG
TCTGTTTATAGTCGCGACTGTTGTCATAGTCAACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTAC
CCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGG
GTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAG
AGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAA
GGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGT
GAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTTACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGG
TGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCGGGGGGGGGCGGGACACTGCGAGGTG
GGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTG
CCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCA