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Detailed information on CNT30359656


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 2e-120

BLAST vs NONCODE:
NONMTRT000178, E-value = 2e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Lactuca sativaEucalyptus grandis12.7260.5681.86215forward
CNT30375121Lactuca sativaArabidopsis thaliana9.722.4481.71164forward
CNT30499549Lactuca sativaCoffea canephora26.6992.0481.37451forward
CNT3020608Lactuca sativaCitrullus lanatus24.3293.282.48411forward
CNT30539234Lactuca sativaBrassica napus21.639.8981.92365forward
CNT30143836Lactuca sativaMedicago truncatula23.6168.4482.71399forward
CNT30261302Lactuca sativaBrassica rapa22.0171.9582.26372forward
CNT30131528Lactuca sativaLolium perenne12.947.2981.65218forward
CNT30653881Lactuca sativaRosa chinensis20.0631.7480.53339forward
CNT30477892Lactuca sativaArabidopsis halleri23.7937.5781.34402forward
CNT3055709Lactuca sativaAmborella trichopoda19.2949.8579.45326forward
CNT30332943Lactuca sativaCynara cardunculus28.8293.4791.17487forward
CNT3050773Lactuca sativaCucumis sativus24.3273.1382.73411forward

Expression of CNT30359656

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEVLVLVEEGRIAKTEVAMTMPTRTNTRRCSRSM*

>peptide 2 (51 aa)
MDGGVGVGGGRKNREDGGGDDNADEDKHKALFPEHVTNKASDSEPWFVGLR*

>peptide 3 (48 aa)
MSFHYVFLFLSMYVYRKRDEWWRRSGGRYIYGEKMSGGGGLKFKLSGR*

>peptide 4 (68 aa)
MVCWASVSKNPTWVEVRAACMSTQIPSSCRFTMCFCFSLCMCTGREMSGGGVVEGGIYMGRRCLVAVV*

>peptide 5 (60 aa)
MVVHGQRFCSTLSFIVAASDTCQKKAPNTHFLLRSCLLCLVFSQIPQISKIKITISGKGD*

>peptide 6 (69 aa)
MVVGIYQIHPHLSATGRRRRRRRRRRKKKKELTDGIDVAPVGFDLRMLKRITVYLTGACQQEACSDPLC*

>peptide 7 (43 aa)
MMHHVIFISGEEIINNNHAISPRNQPINQMTSDETCATSHHNP*

Sequence

>CNT30359656
TCTTATTTCAGTTATAAAAATACAATGTATTTTCATTTAATTCTTAAAACAAACATTATATTGTTTTTATGATCGGTGGATGTTTTCACGATATTAAAAT
TTTATGTAAAGAATATTCAAAATAAAATTAAAAAACCGACCTCGACGCCAGCACCTCTATGGTAGTCCATGGTCAACGTTTCTGCAGTACGCTTTCCTTC
ATCGTAGCAGCTTCGGACACCTGTCAAAAAAAAGCACCAAATACCCACTTCCTACTCAGATCTTGTTTGCTTTGTTTGGTTTTTTCTCAGATCCCCCAAA
TTTCCAAAATTAAGATCACAATTTCCGGAAAAGGTGATTGATGTAAACATTGACCACTTGATAGATCTAATTACAAATTTACAAATATATGGTGGTTGGA
ATCTACCAAATCCATCCACATTTGTCGGCGACAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGAAAGAACTGACCGATGGGATTGACG
TTGCCCCAGTAGGTTTCGACTTGAGGATGTTGAAGAGGATCACCGTATACCTCACTGGTGCTTGTCAGCAAGAAGCGTGCTCCGATCCTCTTTGCTAACC
CTAGCATGTTCAATGTCCCCACTACGTTCGATATGATTGTCTTGACGGGATTGTGTTTGTAGTGAACAGGGGAAGCAGGGCAAGCAAGGTGATAGATCTG
ATCGACTTCAAGTAGTAAGGGCTCAACAACATCGTGTCGAATTAGCTCAAATCTAGGGTTCCCAAAATGATGCATCACGTTATCTTTATTTCCGGTGAAG
AAATTATCAACAACAATCACGCTATCTCCCCTCGCAATCAACCGATCAACCAGATGACTTCCGACGAAACCTGCGCCACCAGTCACCACAATCCTTAACC
CCTTTCTTTTCAGCCCTAAAGGAATCTTCCCGCCCATACTGAACGACGACTCGAATCCAGTAGGATAAACGGATCGTCTCGGGTTTGTCATTTGGATCGA
TTCGGAGACGGAGTAGGAATGGATGGAGGTGTTGGTGTTGGTGGAGGAAGGAAGAATCGCGAAGACGGAGGTGGCGATGACAATGCCGACGAGGACAAAC
ACAAGGCGTTGTTCCCGGAGCATGTAACGAACAAGGCGAGTGACAGCGAGCCATGGTTTGTTGGGCTTCGGTGAGTAAGAATCCGACGTGGGTTGAGGTT
CGTGCCGCCTGTATGTCAACTCAGATCCCATCTTCATGTCGTTTCACTATGTGTTTCTGTTTCTCTCTATGTATGTGTACAGGAAGAGAGATGAGTGGTG
GAGGCGTAGTGGAGGGCGGTATATATATGGGGAGAAGATGTCTGGTGGCGGTGGTTTAAAGTTTAAACTCTCCGGTAGGTGACTAAAGAAAGAATGAATA
GAATAAAGACTGGCGTAGGGTGAATTTACAAATTGGCCCTTTGGATGTAGCATAAAAAGCAAACAGTAGGTTCCAAGTAAGAGAGAGTTGCGGAAAGTCC
TAGTTTGTGTACTTACTACTTAGATATCTTTTTTGAATTAAGTTACTAAATATTCATGATTTTTGTAAAATTATAAACTATAATATTTATCAAAAAAAAA
ATTACTGTTTTTAAGGTCTTAGGAACAGTACAGGGTGGTATGTCAAGTTCAAGATGAGTTAGTTATTTATATACAATGTTTGTATTTTTG