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Detailed information on CNT30359652


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT3|PSBA_ATRBE, E-value = 3e-136

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021444Lactuca sativaCitrullus lanatus13.7623.2687.6397reverse complement
CNT30605440Lactuca sativaGossypium raimondii49.9386.0689.2352forward

Expression of CNT30359652

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSGYDIISFFFLTESVTFISRFIFCGFPDQTRGYQRTMHSTK*

>peptide 2 (42 aa)
MSITFMHNFHTKVSTVNDISPSINYTALTINYRLVESHSADT*

Sequence

>CNT30359652
TTGCTCCTTTTTTAGTTCAAAAACTCCTATACAATTACAATAAGACCAAAGTCTTATCCATTTGTAGATGGAGCTTCGATAGCAGCTAAGTCTAGAGGGA
AATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC
CGATTGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTG
AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAG
ATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCAT
GTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCT
TGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTG
TAGAA