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Detailed information on CNT30359648


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674192Lactuca sativaSetaria viridis13.5923.4588.6853forward
CNT30317874Lactuca sativaCorylus avellana50.7781.1583.33198forward
CNT30373064Lactuca sativaArabidopsis thaliana3020.4983.76117forward
CNT30526368Lactuca sativaPhaseolus vulgaris30.777.5485120forward
CNT30708847Lactuca sativaGlycine max43.5917.6985.29170forward
CNT30398713Lactuca sativaTriticum turgidum42.8261.479.04167forward
CNT30567579Lactuca sativaActinidia chinensis44.8751.0285.14175forward
CNT3085325Lactuca sativaVigna radiata54.129.8481.52211forward
CNT30238041Lactuca sativaBrassica oleracea27.6914.2184.26108forward
CNT30511681Lactuca sativaSolanum lycopersicum41.2848.4981.99161forward
CNT30668910Lactuca sativaTriticum dicoccoides42.8259.4379.04167forward
CNT30611006Lactuca sativaArabis alpina27.6935.5385.19108forward
CNT308572Lactuca sativaZea mays45.1360.6984.09176forward
CNT30714890Lactuca sativaMalus domestica golden56.6778.6587.78221forward
CNT30624536Lactuca sativaDaucus carota52.0514.4587.19203forward
CNT30368346Lactuca sativaSorghum bicolor43.5962.9682.94170forward
CNT30704829Lactuca sativaPrunus avium36.6723.0383.22143forward
CNT30119031Lactuca sativaCitrus clementina68.2135.0581.58266forward
CNT30576776Lactuca sativaOryza barthii18.2120.0684.5171forward

Expression of CNT30359648

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MDNSGETNNDRSLDTRGTKKVSTCEARNVMCDLEKTLCTGTSCMDNTFRDAFSIKVG*

>peptide 2 (55 aa)
MTGVWTPGARRKSAHVRPEMSCVTSKKPFALAPLAWTTRSGMRSLSKLASFSTKW*

Sequence

>CNT30359648
TGGCTGTGATTGGCTCCACCAACTTTGATTGCTTCATCTTCTAGAAGACTCTTGACCCCACATGTTGGTTTCCAGTGGAATTTTACATAGTATGCTTTTC
CAGCTTTGTTGATTAGGGTGTAGAACTTTACTGCAAAGCCTCTAGGGTCTCTGAGAGTTTCAGGGCTTCCACGTTCATGGATAACAGTGGAGAAACGAAC
AATGACAGGAGTTTGGACACCAGGGGCACGAAGAAAGTCAGCACATGTGAGGCCAGAAATGTCATGTGTGACCTCGAAAAAACCCTTTGCACTGGCACCT
CTTGCATGGACAACACGTTCAGGGATGCGTTCTCTATCAAAGTTGGCTAGTTTCTCCACTAAATGGTAATCCTCAAGAAGGATTGGGCCT