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Detailed information on CNT30359537


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Lactuca sativaSetaria viridis42.3443.5382.08279forward
CNT30640184Lactuca sativaNymphaea colorata31.7127.6181.34209forward
CNT30532226Lactuca sativaEucalyptus grandis47.0442.8880.32310forward
CNT30316236Lactuca sativaCorylus avellana20.1828.9886.47133forward
CNT30547574Lactuca sativaIpomoea triloba15.6329.0186.41103forward
CNT30512951Lactuca sativaJuglans regia48.2540.7780.19318forward
CNT30372986Lactuca sativaArabidopsis thaliana48.2531.1281.13318forward
CNT3019597Lactuca sativaCitrullus lanatus20.6418.1881.62136forward
CNT30379936Lactuca sativaManihot esculenta18.9737.4385.6125forward
CNT30405825Lactuca sativaBeta vulgaris8.9525.7689.8359forward
CNT30488117Lactuca sativaOlea europaea20.0327.0585.61132forward
CNT3045373Lactuca sativaPrunus dulcis48.2540.5680.19318forward
CNT30191304Lactuca sativaSecale cereale50.3825.5282.23332forward
CNT30300473Lactuca sativaTriticum aestivum48.4132.9579.94319forward
CNT30224354Lactuca sativaHordeum vulgare47.560.3181.79313forward
CNT30391299Lactuca sativaTriticum turgidum50.3860.3681.93332forward
CNT30561656Lactuca sativaActinidia chinensis47.0422.1480.65310forward
CNT30510505Lactuca sativaSolanum lycopersicum48.2529.2884.59318forward
CNT30552635Lactuca sativaOryza glaberrima35.3622.4581.55233forward
CNT30441158Lactuca sativaAegilops tauschii48.4142.0379.94319forward
CNT3059659Lactuca sativaArabidopsis lyrata16.2424.6583.18107forward
CNT30612508Lactuca sativaArabis alpina47.512.3380.19313forward
CNT30135610Lactuca sativaLolium perenne29.8923.2979.19197forward
CNT3014085Lactuca sativaZea mays18.512083.61122forward
CNT30683923Lactuca sativaTriticum urartu50.3836.2881.63332forward
CNT30345702Lactuca sativaEragrostis tef44.7636.5180.34295forward
CNT30596122Lactuca sativaOryza meridionalis39.4537.5780.38260forward
CNT30370118Lactuca sativaOryza glumipatula18.9720.2385.6125forward
CNT30154011Lactuca sativaPrunus persica13.3531.3286.3688forward
CNT30705326Lactuca sativaPrunus avium27.7714.2486.89183forward
CNT30107537Lactuca sativaOryza longistaminata29.8921.4484.77197forward
CNT30100253Lactuca sativaOryza rufipogon46.2827.6880.33305forward
CNT30575986Lactuca sativaOryza barthii47.0426.2580.65310forward
CNT30497456Lactuca sativaDigitaria exilis18.9742.8185.6125forward
CNT30116094Lactuca sativaOryza nivara29.8922.3982.23197forward
CNT30604019Lactuca sativaOryza punctata18.9736.9886.4125forward

Expression of CNT30359537

Peptides detected in this lncRNA

>peptide 1 (90 aa)
LPLHLLKHMPTPLIQHTVDSTKRLLRCLNFHQVNRLQQPWFCGQLRRIDHTSGSRDNLSTTTMNSISMEHNITHFKTDASHVLFSQRAFL*

>peptide 2 (75 aa)
MASAKPSSIGRASMYKRLCLLGDLLITVREDFSKTVSRKDTTGSDTTISAPPMKSSCKSFKQISKWSSPAPAIMCS

>peptide 3 (46 aa)
MPLMFSSANAPSFDAHWKPATTESLISFRSKTPDLLGKILVPTEFF*

>peptide 4 (56 aa)
LASASPQTHAHAFDSAHCRFHQAPAPVLEFPPSKPAPTTLVLRSAETHRSHVGQSG*

Sequence

>CNT30359537
CTTGCCTCTGCATCTCCTCAAACACATGCCCACGCCTTTGATTCAGCACACTGTAGATTCCACCAAGCGCCTGCTCCGGTGCTTGAATTTCCACCAAGTA
AACCGGCTCCAACAACCTTGGTTTTGCGGTCAGCTGAGACGCATAGATCACACGTCGGGCAGTCGGGATAACTTGTCCACCACCACGATGAATAGCATCA
GCATGGAGCACAACATCACACACTTCAAAACAGATGCCTCTCATGTTCTCTTCAGCCAACGCGCCTTCCTTTGATGCCCATTGGAAACCAGCAACAACCG
AATCCTTGATTTCGTTCAGGTCCAAAACACCAGATCTTCTTGGCAAGATCCTTGTCCCAACCGAATTCTTCTGAGAGAATCTTTCCTCGGACCTTTGGGT
CGTCACGTGGACCAATACGCCCTTCGTCAATGGCTTCCGCCAAACCTTCCTCCATTGGACGCGCTTCCATGTACAAACGGTTATGTTTGTTGGGGGATTT
GCTCATCACAGTGCGTGAAGATTTCTCCAAAACAGTTTCACGGAAAGACACAACAGGGTCAGATACAACAATTTCAGCTCCACCCATGAAGTCATCTTGC
AAATCTTTCAAACAGATTTCCAAATGGAGCTCACCAGCACCAGCAATAATGTGTTCACC