Detailed information on CNT30359105


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-156

BLAST vs NONCODE:
NONGMAT000502, E-value = 1e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528740Lactuca sativaEucalyptus grandis45.7579.6487.96673forward
CNT30315749Lactuca sativaCorylus avellana46.542.1285.67684forward
CNT30510145Lactuca sativaSolanum lycopersicum46.4347.9684.04683forward
CNT30229549Lactuca sativaAnanas comosus45.0770.1686.12663forward
CNT30477816Lactuca sativaArabidopsis halleri44.1280.3284.13649forward

Expression of CNT30359105

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MKGGFLLDVVVSEGTAVLELLSGEDQSLLVWWNTFLVLDFCFHVVDCVGALDLEGDGLSGEGLDEDLHTSP*

>peptide 2 (46 aa)
MPSLSWILAFTLSMVSELSTSRVMVLPVRVLTKICICSQRTNTIRI*

>peptide 3 (44 aa)
MPSLSWILAFTLSMVSELSTSRVMVFPVRVFTKICIPPLRRRTR*

>peptide 4 (30 aa)
MVFPVRVLTKICIPPLSLRTRWRVDSFWML*

>peptide 5 (34 aa)
SSLKQSRIIHQMSSLFLFIKRNQYHFKPYHQSNT*

Sequence

>CNT30359105
ATCAAGCTTAAAACAAAGTAGAATTATTCACCAAATGAGTTCATTATTCTTATTTATTAAACGAAACCAGTACCATTTCAAACCATACCATCAATCAAAC
ACTTAAAACCATCCATGAAATCTCACACATCCCAAACACAAAAGTTTCAATTTCCTCCACGTAGACGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAAT
GTTATAGTCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTATCTTGGATTTTGGCT
TTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATCCCTCCCCTGAGACGGAGGA
CAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGTGG
AATACCTTCCTTGTCCTGGATTTTTGCTTTCACGTTGTCGATTGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAG
ATCTGCATACCTCCCCTTAGCCTAAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGCTTTCCGG
CGAAGATAAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCGACCTCTAGGGTGAT
GGTCTTACCGGTGAGGGTCTTAACGAAGATTTGCATCTGTAGCCAAAGAACGAACACGATAAGAATATAAACAACAAATAACAACAGAAATCATATAAAA
TCAGATGCAAGGTCAGATATTGTAAAGCCTATAACATCAATCGAACATAAAACTGCAGATTTTCTTGTTCAAGACACAAGATTATAACATAAATCAAAAT
AATGAAATCGAATAGAACATCTTAGTTCATGTTACAGTCGAGATGACAATCATAGATTCGTAGCCTATTGTAAACATCAATTTCGATTATACGATTCAGA
TCTAAGGGATCTGTTGATCAGATCGATATAGCTCCAACAAACAACAGCGGATCATGATCATATCAACATCTAACGAATTGAGAAAACAAAACTCTGAAGA
TAATCTTAGATACGAGAAGTGAAAGAACGATCATTAAATTTTACCAAATCGCTGTTTACGGAAGATTCTAGAATTATTCATCAAGATTATAATTCAATAA
ATTTCCAAAATTTTGTTGCAAAAACACAAATTCAAAGAATAGAGTTGCAGATCTAATCGATCTGTTAAAGAAGATCGAATTTGATGCAACAAACAACCAC
CGATCGGAATCATTAACCTAGCAAACAATTCAGAAAAATAAAAAGAAATCGAGAAAAATAAAATGGAAAAG