Detailed information on CNT30358925


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30563287Lactuca sativaActinidia chinensis27.7522.8487.74106forward
CNT30212158Lactuca sativaHelianthus annuus78.0176.6187.92298forward
CNT30597221Lactuca sativaOryza meridionalis16.4929.4485.7163forward
CNT30604899Lactuca sativaOryza punctata20.4233.4884.6278forward
CNT30333329Lactuca sativaCynara cardunculus59.1646.6988.94226forward

Expression of CNT30358925

Peptides detected in this lncRNA

>peptide 1 (50 aa)
VVGRIGRRGRDNKFVFSNNTLEGFKNRERSSKVISPDVSSINNSSKKVFA*

>peptide 2 (92 aa)
WWWGGLEEEVETTSLSFPTIPSRDSRTERDPARSLAQMFLPSTTPAKRYLPEGKLDLINSRVFSPRTKSKVYPVTPGNVVRVLNASAGISAK*

Sequence

>CNT30358925
TGGTGGTGGGGAGGATTGGAAGAAGAGGTAGAGACAACAAGTTTGTCTTTTCCAACAATACCCTCGAGGGATTCAAGAACAGAGAGAGATCCAGCAAGGT
CATTAGCCCAGATGTTTCTTCCATCAACAACTCCAGCAAAAAGGTATTTGCCTGAAGGGAAGCTGGACTTGATCAACTCAAGAGTCTTTTCACCACGAAC
TAAATCAAAGGTGTATCCTGTAACTCCTGGCAATGTGGTGAGGGTTTTGAATGCATCAGCTGGAATATCAGCAAAGTAGGTGGCTACAATGACATTAAGA
CCAGAGCATGTGGATTCAAGATCAGAGTAAGCCTTGGTGAATGCTTCCAATTGGTAGGGTTCAAGATCCTTCACAAGGGTAG