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Detailed information on CNT30358835


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019366Lactuca sativaCitrullus lanatus30.4765.9990.56646reverse complement
CNT30193656Lactuca sativaSecale cereale17.5537.6591.94372forward
CNT30290429Lactuca sativaTriticum aestivum2.3622.839450reverse complement
CNT30592668Lactuca sativaMusa acuminata28.8719.0388.73612forward
CNT30438126Lactuca sativaAegilops tauschii14.8657.5989.84315forward
CNT30574570Lactuca sativaVitis vinifera14.7226.2696.47312forward
CNT30104690Lactuca sativaOryza rufipogon17.5529.9592.47372forward
CNT30337438Lactuca sativaCynara cardunculus21.08100.2297.09447forward

Expression of CNT30358835

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MNITTRSAVPAYRTKRRKRSLSLFSRAEPFSNNIYIYKIIS*

>peptide 2 (31 aa)
MALIGLLPIYLDREEGGGSCGSPARPSLFYF*

>peptide 3 (73 aa)
MPSTRALLATNHSLARRSGFAFQVRYPNRILYSTGSLTPSSILSTALILGPILLQPLTVIACFSGGSHPGWCG*

Sequence

>CNT30358835
GCTTAAGCTTCCCCGGTTTAAGGGATTAATTGATTGGATACCCGAGAACCATAATCTTTCCTAGGAACAGCTTCTACGACGATAGATAGGGGTCAGGTTT
GTTTGGCATCTATGCCCCCTGCCCTCCAAACAGTATGGGAGCCTTTCAGCTCGTACTGCTCACACTCCTAGATCTTCACGGCACCTCCTCCACCATAGTG
TGAGCTGGGAGCAGCTCCGAAAAGCGAGGCCTACTTAAATAAGTAATGAGCTTTCAACAACGTTAACAACACTACGAAAAAAGTAAACTATGGTTACCCA
CTGATCTGATCATAGGTGAAATCCAAACCCTTCTCTGCTCCTTTCCTGACCCTTTCTAAGCTCTTGGATCCTGCCTTGCGCCTCTCTAGACTTTGCTATC
GCTCATGACTGGTATATGGATCTCTCTATGTAGTGGTCGGCCTTCTAGAAGCTTCTCCAGAAGCGACTAGTCGCTTCCCGAATGCCCCTTTCCTTCGCTA
CTAGGAGAGTCGCTAGCTTGCTTCATTATATTCTATAAGCGGAGCGACTTGTCGAGTCTACGAAGCTTCGTAGTTGCTTCCCCCCCCCTTTTTTCTTTTG
CCCCGCCATGCCACTAGATCCATAATGACCGGCGAGTCGGAACATGTATGAATATAACCACGCGGAGCGCCGTACCGGCCTATCGAACGAAGCGAAGAAA
GAGATCATTGAGCCTATTTAGCCGAGCGGAACCCTTTTCAAATAATATATATATATATAAAATAATAAGCTAAGGGGGCTGGGAATCGCAAGAATTGAAA
AGTCCTCCATTGAATGGGATGAGAAAGACAGGTTCGGAAATGGCCGGATTAGCAGGAGGAAGGGCGGCCCCACCCTGAAACAAAGGTGTACGTACATAAA
TAAAGAGACTGGTTATGGCCTTGATAGGGCTCCTTCCCATCTATCTTGACCGGGAAGAGGGGGGAGGCTCTTGCGGAAGCCCTGCCCGCCCTTCTCTATT
CTATTTTTAGGATCCCTCTGAGGAGGCTTTCCGGACTCGTAAAAGACGGCTAGGAACAAGAATAGGGTCAGTAGTCTCTGCCGTTGCAGGTCCTTCTCCT
TCCGCTGAGATGGCCCTCTTTTTTGTTTTGTTTGTTCACCGCGGCACGAAATCATGAAGAAGCTGGAATAACTCAGAAAGAGAGTGGCGCCTAGCCGTTG
AGAGCGTCTGTTGTCTTTGTAGAGGAACAGTACGATCTTGGACTGGCCCCCTTCGCATGACCTAGAAATAAAAAGAAGTGCGTGCTACTATAAGCCCTCT
AAACTCCTCCCTCAGGACACTATTGCATTGCCTATGGGGACGGGCTAGCCCCGACTTCCATAGGTCCTTGGTTCGACCTCCTAATGAGAATTGAGGTCCT
TGCGCGGGTGTCTCATCCCTAAGACTTGTTTGCTCTGTATGGAGTGCCCCGTGGTTCCTCGAGTGCCAGCCGCAGAGAGGAATGCCATCAACTAGGGCGC
TATTGGCCACTAACCACTCGCTCGCCAGACGCTCGGGCTTCGCGTTTCAAGTTCGTTATCCTAACCGTATCCTCTACTCCACCGGGAGCCTGACCCCTTC
TTCTATCTTATCTACTGCCTTGATCCTCGGCCCCATACTGCTCCAGCCGCTCACTGTAATAGCTTGCTTCTCGGGTGGCTCGCACCCTGGGTGGTGCGGC
TGAGCCAGAGTGGGCTCAGCAGTCGGCCTATCTTTCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTACACTGACCATAGTAAACTCC
TTCTCATTGTACCGAAATAGAGGTTTGATTTAAACGACTAGGTACAACATCACATTTTACACTTGGGGAAGGTACAGCCCAACTATGAAGTACATCAGCA
AATGTTACAATAATACGTAGATGACTTTTGGCTGGTACAACCACTCGATTGTCCACTTCTAATAAACATAATTGACCCAATTCTTGATCACCTTCTAGAA
TCGTATAAATGTCAAAAGTGAGTGACTGTTCATCGGAACTGTTATAGTCCGAATACTCATAAGGTTGGGTCGACGCCCGTCTCCCCCCAAACTGTACTTG
CAAGTTTCCCCGCAAAAAGC