CANTATAdb - search

Detailed information on CNT30358716

BLAST search results

BLAST vs Swiss-Prot:
sp|P32869|PSAD_CUCSA, E-value = 3e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3094391	Lactuca sativa	Solanum tuberosum	28.27	33.18	86.9	145	forward
CNT30724394	Lactuca sativa	Lupinus angustifolius	23.78	20.03	84.43	122	forward

Expression of CNT30358716

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MMAAPPVLPAKIGDGVLGSSSGGVNPTGASLVGTSPAAAALMVVNRVVGLVGLTVVKEVSCDCFHGEV*

>peptide 2 (39 aa)
THPLPAGVNFFRVHSIFGVQILNFPIRKHPVKLVFNLVF*

Sequence

>CNT30358716
ACCCACCCCCTGCCGGCCGGCGTTAACTTTTTCCGGGTACACTCCATCTTTGGGGTGCAAATATTGAACTTCCCCATTCGGAAACACCCTGTAAAACTGG
TATTTAATCTTGTATTTTGACCTCAATCTTGTCCCAAGAGCCAAACACTGTTCTTTTCTCGCTAATTTCAACAGATTCGGTCCTTCCCTCATGATGGCGG
CGCCGCCGGTGCTTCCGGCGAAGATTGGAGATGGGGTGTTGGGGTCGAGTTCAGGTGGGGTGAATCCCACCGGAGCTTCTTTGGTGGGGACTTCCCCTGC
CGCCGCGGCCTTGATGGTGGTGAATCGGGTGGTGGGTTTGGTTGGTTTGACGGTGGTGAAGGAGGTGAGTTGTGATTGTTTCCATGGAGAGGTTTGAGTG
GGGATTGTAGGTGCGAAAAAGGAAGCTTGGGTAGCCATGGCCATCGGTGGTGGTGGGTGATTTGAATCAAGAAGACGAAGAATTTTGTGAAGTTGGGTGG
CGATGGTGGTGGG