Detailed information on CNT30358685


BLAST search results

BLAST vs Swiss-Prot:
sp|Q332T8|RR3_LACSA, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30447572Lactuca sativaSaccharum spontaneum27.846.2891.67108forward
CNT3018340Lactuca sativaZea mays27.067.8890.48105forward
CNT30681845Lactuca sativaTriticum urartu27.8416.8591.67108forward
CNT30604560Lactuca sativaOryza punctata27.8410.7291.67108forward

Expression of CNT30358685

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MFSYFFVHNSGYKFLFFYLLADPQNNFLVVRTKGNDDLGLYQV*

Sequence

>CNT30358685
GTCGGCTTTCAATTAAGATTTTTGGAGATCCCATATAGATTATGATTTGGATCAGGTCGATTCTTTTTTGAATCTCTATACGTGCAATTCCCTCGACGCC
AGAAGATGTTTTCATATTTTTTTGTACATAATTCTGGATATAAGTTCTTATTTTTTTATCTTCTTGCAGACCCTCAGAATAATTTTTTGGTTGTGCGAAC
CAAAGGGAATGATGACCTTGGGTTGTACCAAGTCTGAAACCAATTGGATTTATTTTTTGTCCCATGTTCCCCCCTTACTATACATATCATAATACGACAT
AGTTGTATGCTTTTTTTTTCAACTTAGGTTTTTGTGACCATGTAATAGAGTCGGTATCTATATATTCATCTAAGGATATATCTTTCAT