Detailed information on CNT30358660


BLAST search results

BLAST vs Swiss-Prot:
sp|O23255|SAHH1_ARATH, E-value = 5e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Lactuca sativaSetaria viridis37.0741.583.41205forward
CNT30376211Lactuca sativaArabidopsis thaliana38.1629.1882.94211forward
CNT30261371Lactuca sativaBrassica rapa19.8926.3287.27110forward
CNT30329805Lactuca sativaDioscorea rotundata20.4319.2584.07113forward
CNT30117878Lactuca sativaOryza nivara35.0843.1181.44194forward
CNT30723539Lactuca sativaLupinus angustifolius35.0815.2485.05194forward

Expression of CNT30358660

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFLAQACRFRCRNGLCCRRWRCSSFFSCGPP*

>peptide 2 (34 aa)
MAYVADDGVVLHFFHVVHHDDVFVAGGGDDYVGF*

>peptide 3 (36 aa)
MKSSHLLIKMLSFCIREHPSIGLGFNRDSFHTWVCF*

>peptide 4 (45 aa)
LQYYTTFNTPPLFNPHNPINSLQPPFPTTTTRRIYFEWFMLNQYL*

>peptide 5 (46 aa)
YNITQPSILHPYSTPIIQLILSNHLSQQPPPDVYISNGLCLISTCK*

>peptide 6 (57 aa)
MSISLSKWPMLQTMALFFIFFMWSTMMMSLLPVVVTIMSASERTSSRVRTWRPSIRA*

Sequence

>CNT30358660
CTACAATATTACACAACCTTCAATACTCCACCCTTATTCAACCCCCATAATCCAATTAATTCTCTCCAACCACCTTTCCCAACAACCACCACCAGACGTA
TATATTTCGAATGGTTTATGCTTAATCAGTACCTGTAAGTAACAGGCTTGTAGGGACCTTCAACCGGCACATTAATATAATCAGCCTGATCTTTACTAAG
CTTCGTTAGCTTCGCTCCAAGCTTACCAAGATGAAGAGCAGCCACCTTCTCATCAAGATGCTTAGTTTTTGTATCAGGGAACACCCATCGATCGGTTTGG
GGTTTAATCGTGACTCTTTTCACACCTGGGTATGTTTCTAGCCCAAGCATGTCGATTTCGTTGTCGAAATGGCCTATGTTGCAGACGATGGCGTTGTTCT
TCATTTTTTTCATGTGGTCCACCATGATGATGTCTTTGTTGCCGGTGGTGGTGACGATTATGTCGGCTTCTGAGAGGACGTCTTCTAGGGTTAGGACTTG
GAGACCTTCCATTAGAGCTTGAAGGGCACAGATTGGGTCGATTTCTGTCACTA