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Detailed information on CNT30357929


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Lactuca sativaSetaria viridis55.3660.6480.24248forward
CNT30523218Lactuca sativaSetaria italica64.0652.5679.79287forward
CNT30318271Lactuca sativaCorylus avellana57.3725.9182.1257forward
CNT30703567Lactuca sativaQuercus lobata72.3264.1683.64324forward
CNT30616210Lactuca sativaSesamum indicum60.0421.584.01269forward
CNT3069058Lactuca sativaQuercus suber72.3237.0381.17324forward
CNT30197530Lactuca sativaPisum sativum69.6439.5983.01312forward
CNT3042757Lactuca sativaPrunus dulcis56.0341.4280.88251forward
CNT3092650Lactuca sativaSolanum tuberosum19.222.487.2186forward
CNT30186872Lactuca sativaSecale cereale63.3956.9180.28284forward
CNT30299936Lactuca sativaTriticum aestivum54.0244.3282.23242forward
CNT30221015Lactuca sativaHordeum vulgare52.0144.2181.55233forward
CNT30397255Lactuca sativaTriticum turgidum61.8357.1181.95277forward
CNT3086297Lactuca sativaVigna radiata58.9322.783.33264forward
CNT30553196Lactuca sativaOryza glaberrima31.9225.6381.82143forward
CNT30441099Lactuca sativaAegilops tauschii63.3955.0480.99284forward
CNT30255921Lactuca sativaAvena sativa53.3542.5382.01239forward
CNT30656490Lactuca sativaTriticum dicoccoides64.7346.9380.34290forward
CNT3059678Lactuca sativaArabidopsis lyrata40.437.6381.22181forward
CNT3082467Lactuca sativaBrassica juncea67.1941.9880.4301forward
CNT30261175Lactuca sativaBrassica rapa64.7361.4479.66290forward
CNT30450830Lactuca sativaSaccharum spontaneum62.0533.5780.58278forward
CNT30139599Lactuca sativaLolium perenne53.355082.01239forward
CNT304209Lactuca sativaZea mays43.333.3381.96194forward
CNT30229571Lactuca sativaAnanas comosus32.5935.4481.51146forward
CNT30211318Lactuca sativaHelianthus annuus58.9367.8779.55264forward
CNT30687044Lactuca sativaTriticum urartu55.3624.3482.66248forward
CNT30348363Lactuca sativaEragrostis tef64.7352.0679.66290forward
CNT30620798Lactuca sativaCajanus cajan37.2831.9980.84167forward
CNT30370989Lactuca sativaOryza glumipatula23.8817.1285.05107forward
CNT30644824Lactuca sativaCannabis sativa67.4131.3386.75302forward
CNT30331117Lactuca sativaDioscorea rotundata5023.6581.25224forward
CNT30147953Lactuca sativaBrachypodium distachyon64.7333.3780290forward
CNT30101647Lactuca sativaOryza rufipogon53.3525.6481.17239forward
CNT30581397Lactuca sativaEchinochloa crusgalli36.6127.9481.1164forward
CNT30496126Lactuca sativaDigitaria exilis64.0642.2180.84287forward
CNT30117618Lactuca sativaOryza nivara31.9231.7882.52143forward
CNT3050826Lactuca sativaCucumis sativus23.2130.581.73104forward

Expression of CNT30357929

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MAVTVFRRACSVYVTASRMTFSRKIFKTPRVSS*

Sequence

>CNT30357929
ATTGGATAAGTGATATTGTATTAATAGCTTCAATTACAGGTAATACCACATCCGATTACAGATAACAAATCAATGAAAACCTCGATGCCAAACAAGAACC
CTGGAAAGTAGAAACGTAAAATTCTCTTAACCGCCAAATCCGTAGAGAGTACGGCCTTGGCGCTTCAAAGCATAAACAACATCCATGGCGGTGACTGTTT
TCCGGCGAGCATGTTCGGTGTATGTGACGGCGTCACGGATGACGTTCTCAAGAAAGATCTTCAAAACTCCACGGGTCTCCTCGTAGATTAACCCACTGAT
ACGCTTGACACCTCCTCGTCTGGCCAGACGGCGAATCGCCGGCTTGGTGATGCCTTGGATGTTGTCCCGGAGAACCTTACGATGACGTTTGGCTCCACCC
TTTCCCAATCCCTTGCCTCCTTTTCCTCTTCCTGACATGTTTTCTCTC