Detailed information on CNT3035773


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJF9|SAU21_ARATH, E-value = 9e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30542807Cucumis meloBrassica napus4.8129.5688.3360forward
CNT30234281Cucumis meloBrassica oleracea5.5330.5388.4169forward
CNT30655496Cucumis meloRosa chinensis5.9325.6986.4974forward
CNT30644712Cucumis meloCannabis sativa6.0920.3286.8476forward

Expression of CNT3035773

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MYYLQYGHSKINILKGTPLSNTAREKCCILFQSFMYSTCFCFLTYHQ*

>peptide 2 (44 aa)
NCHSYSIYYWVFFFSVSHLQQLAKREVTFKNTSSLQGIVNPPIG*

>peptide 3 (90 aa)
LSFIFYLLLGVFFFSFSSSTIGQARSDFQEYIFITRDRQSSHWMIESELFFSFTQQILKRWMLQVRNRYHMSSLLCLSNVDSQKPLWNSR*

>peptide 4 (56 aa)
MSEPHENCVKIYLRKGKEDIWSIDHLLKDNFQYVRLCFLSPLYLLELSYLHYVTQF*

>peptide 5 (43 aa)
MDASSKKSVSHVVSFVSLQRRQPKTPLEQSMMISLGCLSNGIP*

Sequence

>CNT3035773
AATTGTCATTCATATTCTATCTATTATTGGGTGTTTTTTTTTTCAGTTTCTCATCTTCAACAATTGGCCAAGCGAGAAGTGACTTTCAAGAATACATCTT
CATTACAAGGGATCGTCAATCCTCCCATTGGATGATCGAATCCGAACTCTTCTTCAGCTTTACTCAACAAATCTTGAAACGATGGATGCTTCAAGTAAGA
AATCGGTATCACATGTCGTCTCTTTTGTGTCTCTCCAACGTAGACAGCCAAAAACCCCTTTGGAACAGTCGATGATGATTTCCTTGGGCTGTTTATCAAA
CGGAATCCCATGAGAAGAAAATTAGTGTGTGCATATATAGGAAACTCAAAAAGAGGGATTTGCTGATGTCAGAACCTCATGAGAATTGTGTAAAGATTTA
CCTGAGAAAAGGGAAAGAGGACATTTGGAGTATTGATCACTTGCTGAAGGATAATTTCCAATATGTAAGGCTTTGCTTTCTATCACCCCTGTATCTTCTT
GAGCTATCATATCTACATTATGTCACTCAATTTTGACCCAATAGTTTAATCTAATGGGTAAAGACAAATTTAATATTATATTCGTTTAACATAGACACTA
TCGCTGCTGAGAATTGTGAAGCCTCCCATTGAATGATCATATCCAAATTCTTTCTCTGCCTTTTGTTACAACGGCTAATTTGAGTAAGGTTCTGGTACTA
CATACCGCTTCTTTTGCATTTCTCCTGGAATGTACCCATTTGGAACATGATTGGACAGGAAAGAAGATTCAACAACATTTGAAGCTACTTGGCAAAAGAT
ATCCTCGACATGATGACAGGGTAGTCTGATAGCAATATTTGCATCCCTTGATCTTCAATTCTGTGCAAGAAAATTTAAGCTTTACACCGAAAGGTTCCAT
AGGAATATAGAATCATATAATATGATTCTACAAAATCTACAGATGTGGGTTCCACTGCAGGATGAACAGTAGAAACATATGACAAGAATTAACACATGAA
TTTGTAGTCAAATTGATTAACGTTGAACAGTGATTGTGAATGTATTATCTACAGTACGGCCATTCCAAAATTAACATCCTAAAAGGGACCCCACTTTCAA
ATACTGCTAGGGAAAAATGTTGCATTCTATTTCAATCATTTATGTATAGCACATGCTTCTGTTTTCTGACTTATCATCAATAGGATGGTTTTCATTAGTA
GTGTATGCTGGTAGGTGAACAATTTCAGCTGCCATTAATTGTTAAACA