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Detailed information on CNT30357019


BLAST search results

BLAST vs Swiss-Prot:
sp|P47905|RS27A_LUPAL, E-value = 8e-85

BLAST vs NONCODE:
NONGMAT000502, E-value = 2e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728895Lactuca sativaCorchorus capsularis21.5331.4589.91228forward
CNT30263225Lactuca sativaBrassica rapa20.6833.3886.3219forward
CNT30725948Lactuca sativaLupinus angustifolius21.5327.8488.6228forward

Expression of CNT30357019

Peptides detected in this lncRNA

>peptide 1 (41 aa)
NGPRNSIHKYISIYQYLMMPEAMRGIAEKQKQRASKSSLEN*

>peptide 2 (41 aa)
MPSLSWIFAFTLSIVSEDSTSNVIVFPVRVFTKICIFAELY*

>peptide 3 (51 aa)
MLINKSIQFHQFKNNPRNPGLPQDITRKLRIIIHNSKNDDEHLSNQAFSFW*

Sequence

>CNT30357019
CAATGGTCCAAGGAATTCTATACATAAATATATTTCTATATATCAATATCTGATGATGCCAGAAGCAATGAGAGGGATTGCTGAAAAACAAAAACAAAGA
GCATCGAAAAGTTCATTGGAAAACTAATTTTGGAAAGGTCGGTTTTGGTAGCAAGGCTGGATTATTCTGATCGAGAATATCGTCTAACATGTTTCATATG
CATTTATCAATTAGCTCCAAACAAGAAAACCTAAAAATTCAGACTAACAATAAGTTTTTAACATAATCAAGACACCTACAGGAGTAGCTAAGTAGTAAAC
ACGTCATTGTAAATCAGTTTAGATAGCTTGAAATGTTGATAAACAAAAGCATTCAGTTTCATCAATTCAAAAACAACCCTAGAAATCCAGGTTTACCACA
AGATATAACAAGAAAACTCAGAATTATAATTCATAACTCAAAAAACGACGATGAACACTTATCTAATCAAGCCTTCTCCTTCTGGTAGACATAAGTGAGA
CCACACTTGCCGCAATAGTGCCTGTCGAAGTGGTTAGCCATGAAAGTCCCAGCACCACACTCAGCATTAGGACACTCTTTCCTCAACCTCTGCACCTTTC
CGGAATCATCAACCTTGTAGAACTGCAACACGCTCAACTTAACCTTCTTGTGCTTATGCTTGATCTTCTTCGGCTTGGTGTAGGTCTTCTTCTTGCGCTT
CTTTGCGCCACCACGGAGACGGAGAACCAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCTGCCGTCCTCAAGTTGTTTCCCGGCG
AAAATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCGGAGGATTCAACCTCCAACGTAATCG
TCTTCCCAGTTAGGGTTTTCACGAAGATCTGCATTTTTGCCGAATTGTACTGATACGGCTTGATTAGGGTTGGAAGAAGGTTTTGTAGGAAGGAAAAAAA
TCAAATTGGGCATTTGAGGGCCATCGTCGTGAAAAATAAAGCCCTACTCTTCAATTTGG