Detailed information on CNT30356947


BLAST search results

BLAST vs Swiss-Prot:
sp|A4GYN8|RR12B_POPTR, E-value = 1e-59

BLAST vs NONCODE:
NONVVIT000515, E-value = 8e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730546Lactuca sativaCorchorus capsularis55.4547.3895.71280forward
CNT30406883Lactuca sativaBeta vulgaris48.9196.1191.09247forward
CNT30201818Lactuca sativaPisum sativum66.7324.4794.66337forward
CNT30284960Lactuca sativaTriticum aestivum99.856.7692.06504forward
CNT30384007Lactuca sativaTriticum turgidum99.857.7390.87504forward
CNT30569656Lactuca sativaActinidia chinensis92.8755.797.65469forward
CNT30543269Lactuca sativaBrassica napus94.6516.1596.44478forward
CNT30509374Lactuca sativaSolanum lycopersicum36.6392.593.51185forward
CNT30228329Lactuca sativaAnanas comosus40.9910095.17207forward
CNT30331679Lactuca sativaDioscorea rotundata59.643.9495.35301forward

Expression of CNT30356947

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRFSPHTAPRSILSKLLDPFPRSRIPSLLPLRPEE*

Sequence

>CNT30356947
CAGTTTTTTCTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGGGGTTCAAGAATCAGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTGGCTTT
TTTACCCCATATTGTAGGAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCGGGTAAATCCTT
AACCCTCCCCCCTCTTACTAAGACTACAGAATGTTCTTGTGAATTATGGCCAATACCGGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACT
CTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTTGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCGTACATG
AGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTTATTGGATCCTTTTCCGCGTTCGAGAATCCCCTCCCTTCTTCCACTCCGTCCCGAAG
AGTAA