« Back to Lactuca sativa search


Detailed information on CNT30356900


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJF6|SAU23_ARATH, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3089985Lactuca sativaSolanum tuberosum7.1624.5685.7170forward
CNT30508403Lactuca sativaSolanum lycopersicum10.8538.6982.08106forward
CNT30337201Lactuca sativaCynara cardunculus16.7944.4484.15164forward

Expression of CNT30356900

Peptides detected in this lncRNA

>peptide 1 (39 aa)
VTFSTWRKIDVAYTLFLNRLKIQAKQQKKVSCSGGLRGY*

Sequence

>CNT30356900
GTGACATTCAGTACATGGAGAAAGATCGATGTGGCATACACACTTTTTTTGAACAGATTGAAAATACAAGCTAAACAACAAAAGAAAGTAAGTTGTTCTG
GTGGGCTTAGAGGATATTGATAAAGAAAGCCCTAATGGCATAACATGAACACCATACGTTGAACTATGCTCGTCATTAATGTATTATTGCTGAAACAAAA
TTTTGTTATAATACAGTTAATTTGGAGACCACATTACTCCCTCTGATTTACAAGTAATTAATCCTCATGGTAATTTTGACTGTACAAAACTGTTAGCAAA
TTCACGATGCATGCCTAGCTCTTCATCATAACGAGCAAAGGCGGCAGGCAACATCAACAAATACTTCCTCACGGCATGGAATTGTGAGGCCACCCATTGG
ATGATCATATCCAAATTCTTCCTCTGATTGATGTAGCAAGTCTTGGAATGAAGGCTGGTTTAATAATGATAAAGGAACAACAAATCGTCTTTTCTCTTGA
TCACCAACATAAACTGCAAAATGTCCTTTAGGGATGATGTCTGTAGATGATGATGGACGGCTTCCATTGGACAATGATCGACCAAGAACTTTCTTTGCTT
GAATGATCCGAGGCATACGAATAGCCATGTATATATGAAGGGTACGGTCACTTAATTTGTTTTGGTGAAGAAATGCAATATGAAAGGATTTCGTTTTTGT
GACAGGTGCTGTGGAGGAGTTGTGCTTGATATCAGCACAATTGGATGCATTATATAGGTGTAAGAAGATTTCAATAAGATTGGGTAATAGTAGGAATTTT
AGCGAAGAGATTGTGACACATTCTTGCAAAATGCAAGATCACATGCTTTTGTCTTCCAAGTTGTTATTGGACCCAAAGGATTAGACGTTGAATGAAGTAT
GCCACATATTTTCTGCAATGTAAGTGGAAAAGAGTGAACAAAACTATGGCCCATATGTATATTGGATTCTGAAGGAC