« Back to Lactuca sativa search


Detailed information on CNT30356771


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 3e-85

BLAST vs NONCODE:
NONPOPT001132, E-value = 9e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316655Lactuca sativaCorylus avellana20.7971.4389.78225forward
CNT30545885Lactuca sativaIpomoea triloba20.4348.6886.88221forward
CNT30518728Lactuca sativaJuglans regia19.6936.4189.67213forward
CNT30374078Lactuca sativaArabidopsis thaliana20.7936.787.11225forward
CNT30628786Lactuca sativaVigna unguiculata20.745.7187.95224forward

Expression of CNT30356771

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MRRCWSGGMPSLSWIFAFTLSIVSEDSTSNVIVLPVRVFTKICIVGDFVWDSGTRV*

>peptide 2 (34 aa)
MIQVDKTASSVQLQLIIIINISKQIVAKIIIEIL*

Sequence

>CNT30356771
CATGCACCCATTTTCATAGAGGAAACATTTTTCAATAAAAAATATTCAAGTGTGTGAACTTTAACGAAAAAAATAATAAATTTATGACAACAGCAATAAC
AAGTGTATCAAAATATCATCATGATTCAAGTAGATAAAACAGCGAGTAGTGTTCAGCTTCAATTAATAATCATAATCAATATCTCGAAACAGATAGTAGC
CAAAATAATCATTGAAATCCTATAGAGGGATCATATAGATAAAAGCAGCAACTAGTGTATTCATGTCAGATTATTAACGTATCAAATTATCCTTTCGAAT
AAAATCTTAATAGCTACACTAAAGATGATTATAGTTTTGAATAATCTTACTAACTGCAGCAAAGATTATTAATTTTAGAACACATCCATAACCCAAAATG
TAAAGCATTCAAGATGCTGAATTCAAAAACAAACCTCCAAAATCAAGGTTAGAAACAGATCAACTACAGAAATACATAACATGTAAAAGAAAGATCGATA
CTTATCTAATTGAATAAAACTCAAGCCTTTTGGTAAACATAGGTAAGTCCACACTTACCACAGTAGTGCCTATCGAAATGGTTCGCCATAAACGTTCCAG
CTCCGCACTCAGCATTAGGGCACTCTTTCCTCAACCGCTGCACCTTCCCTGAATCATCGACCTTGTAGAACTGCAAAACGCTCAACTTCACCTTCTTGTG
CTTGTGCTTGATCTTCTTTGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTTGCGCCACCACGGAGGCGGAGGACAAGGTGAAGAGTTGACTCCTTCTGG
ATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTTG
CTTTCACATTGTCGATCGTGTCAGAGGACTCTACCTCCAACGTGATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCGTCGGCGATTTCGTGTG
GGATTCAGGAACTAGAGTTTGAAAGGAAAAGGATAACTTTTATAGGACTAGGGTTTCCGAGATAAAATGGGCTTATCTGGGC