Detailed information on CNT30356763


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691007Lactuca sativaOryza sativa5075.9190.04271forward
CNT30272397Lactuca sativaChenopodium quinoa22.326.5588.43121forward
CNT30730658Lactuca sativaCorchorus capsularis76.252.6190.56413reverse complement
CNT30198947Lactuca sativaPisum sativum37.6424.4989.71204reverse complement
CNT30502643Lactuca sativaNicotiana attenuata75.8331.7488.08411reverse complement
CNT30163195Lactuca sativaPistacia vera35.7983.2686.08194forward
CNT3091171Lactuca sativaSolanum tuberosum21.5917.3187.18117reverse complement
CNT30191576Lactuca sativaSecale cereale5069.1389.67271forward
CNT30297822Lactuca sativaTriticum aestivum5065.7889.67271forward
CNT3082974Lactuca sativaBrassica juncea42.2526.9493.45229forward
CNT3017923Lactuca sativaZea mays44.2885.7187.5240reverse complement
CNT30610477Lactuca sativaGossypium raimondii46.8637.4692.13254reverse complement
CNT30232463Lactuca sativaAnanas comosus21.449.1594.83116forward
CNT30644293Lactuca sativaCannabis sativa15.1325.5592.6882reverse complement
CNT3056176Lactuca sativaAmborella trichopoda42.444.9588.26230reverse complement
CNT30319059Lactuca sativaAsparagus officinalis76.250.888.14413reverse complement
CNT30150789Lactuca sativaBrachypodium distachyon40.4126.5188.58219reverse complement
CNT30550344Lactuca sativaOryza brachyantha34.579.5788.77187forward

Expression of CNT30356763

Peptides detected in this lncRNA

>peptide 1 (71 aa)
NRSYYIDIPSTQHRSSKGSRRPTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFRIQFEIFLERYREGIGME*

Sequence

>CNT30356763
GCAATCGATCGTATTATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGGATCTTTCAGAAA
ATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTAGGATCCAATTCGAGATTTTCCTTGAGAGGTATCGGGAA
GGAATTGGAATGGAATAATATCGATTCAGACAGAAGAAAAGGTTCTCGATTGATTCAAACACTGTACCTATGGGATAGAGGAAGAGGAAAAAACCGAATA
TTTCACATAGTGCTTTTAATCAATCTGATTTATTTCGTACCCTTCGCTCAATGAGAAAATGAGTCCAATTCTAAAGGATCAAACCTATGGGACTTAAGGA
ATAATATAAAAAAAGAGAGGCAAAAATATTGATATTAAATAAAAATCAATAAAATAAGTAAATAAAAATGAAAATAAAATAAGTAAATAAAAATGAAGTA
GAAGAACTCAGATTCCAAATGAACAAATTCAAACTTGAAAAG