Detailed information on CNT3035665


BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 3e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670676Cucumis meloSetaria viridis17.6222.1683.7286forward
CNT30441454Cucumis meloAegilops tauschii20.713.8584.16101forward

Expression of CNT3035665

Peptides detected in this lncRNA

>peptide 1 (44 aa)
EIWHLENLHCPWQLREKTRFQASLHPALPIQSQSNQRSCFLDLN*

>peptide 2 (34 aa)
RDMASGKSSLSMAAERKDEISGVLTPCSPHPKSE*

Sequence

>CNT3035665
TCGAGATATGGCATCTGGAAAATCTTCATTGTCCATGGCAGCTGAGAGAAAAGACGAGATTTCAGGCGTCCTTACACCCTGCTCTCCCCATCCAAAGTCA
GAGTAATCAAAGGAGTTGCTTCCTTGATCTGAATTAAAGTACATGGGTGCAACATCAGAAGAAGCTGGACTGGTTTTTATTGCAATATCTCCATTCATAG
CCAATGAATCCATGTTGGGAAGTTGATTTGTAAGTGGTTTTTCCTCCAGGAAACCCATTGTGCTATAGTATGCTTCATCGGAGTTATTCACGAAATTATT
GTTCTGGATTGGATCTGGTTGGGTCTTTGCCAAGCTAGTTTTGGGAAGTGGAGCTTCATAGGGAAAGTTAACCTTAGCTTTCTTTCCACGAATTCGTCGT
GCTTCAGCATCATACGCTCGAGCAGCTTCTTCAGCAGTATTAAAAGTGCCCAGCCACACACGAACTCCTTTACGTGGGTCACGAATTT