CANTATAdb - search

Detailed information on CNT3035661

BLAST search results

BLAST vs Swiss-Prot:
sp|Q41142|PLDA1_RICCO, E-value = 3e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3046495	Cucumis melo	Prunus dulcis	32.86	28.71	85.34	232	forward
CNT30144288	Cucumis melo	Medicago truncatula	24.08	19.68	82.35	170	forward
CNT30133942	Cucumis melo	Lolium perenne	12.46	29.14	84.09	88	forward
CNT30228403	Cucumis melo	Ananas comosus	13.88	25.65	89.8	98	forward

Expression of CNT3035661

Peptides detected in this lncRNA

>peptide 1 (33 aa)
NKTHNSPPIRISIWHWAIHHHNLLVMSEHGRDL*

>peptide 2 (33 aa)
MSSTGTYARPIKVAPMGLSSFTVKITFDALWAQ*

>peptide 3 (29 aa)
MPYGHSKCEKIHTILDWKVQIPIFVSSQP*

>peptide 4 (30 aa)
MGTVNVKRFIPSWIGRFRFQYSCPPNPSLF*

Sequence

>CNT3035661
CAACAAAACTCACAATTCTCCTCCTATCCGAATCTCCATTTGGCATTGGGCTATCCACCACCACAATCTTCTGGTGATGAGTGAACATGGTAGAGATTTG
TAGATCTTGAACAATGCTTCCACCATCATCGGGATTACGAGGGCACAACACACAGTGCACGTCAGTATCTTGGAAGTAACGTTCAGTTTCTTCATCGTGA
GTAGCCATCAAACCATCTTTTTTAAGTAAACCGACTGATGTTCTGTCATCCCAGACAAGCATAAGAACCCTGACCCCTTCACTTGCTTTCTGCTTAAGCA
GTTCACCAAGCATGGTGTCTCCTCCAGGAAATTTACGACTTTTTATACCACGACCCCAATTGCGATCTTTAGTAACACTGAAGTATTGAAGTTTGACATG
AATCTTTGATTCCCCTTCAATAGGATTTTGATTTTCATCTAAGATTGGAACCCATCTGTCAACTTCCTCCCCGTCTACGATGTCTTCCACAGGTACATAT
GCACGCCCAATCAAAGTTGCACCAATGGGATTGTCATCCTTCACGGTGAAGATAACATTTGATGCCTTATGGGCACAGTAAATGTGAAAAGATTCATACC
ATCTTGGATTGGAAGGTTCAGATTCCAATATTCGTGTCCTCCCAACCCTAGCCTTTTCTAAATCTATAGTGGCATACAGTTTGGTTTGTCCTTTTCCAAT
TCCGAC