CANTATAdb - search

Detailed information on CNT30356508

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002429, E-value = 3e-61

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30536187	Lactuca sativa	Eucalyptus grandis	22.03	12.48	85.71	154	forward
CNT3019929	Lactuca sativa	Citrullus lanatus	49.21	79.26	93.02	344	forward
CNT30629265	Lactuca sativa	Vigna unguiculata	44.64	27.56	93.27	312	forward
CNT30146680	Lactuca sativa	Medicago truncatula	43.49	24.26	91.45	304	forward
CNT30434475	Lactuca sativa	Papaver somniferum	55.36	100.78	91.99	387	forward
CNT30323704	Lactuca sativa	Asparagus officinalis	31.62	74.41	90.5	221	forward

Expression of CNT30356508

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MGKLHKQYIDFLLQEQARKSIGPHSCPCTSRRFGSYCGPCFFRRNSRLRSYSKCCQNISILGFILRSIISQFIIFNTSFESNTCFSLCLW*

Sequence

>CNT30356508
CNCTACCGTAGTTTTTAGCGGATAACCCCAATTTAGGTTTAATAGTACATCCCAACAGGGGACGACCATACTTGTTCAATTTATCTCTCTCAACTTGGAT
GCCGTGAGGCGGACCTTGGAAAGTTTTAACATACGCAGTAGGGATTCGCAAATCTTCCAGACGTAGAGCACGCAGGGCTTTGAACCCAAATACATTACCT
ACAATGGAAGTAAACATGTTAGTAACAGAACCTTCTTCAAAAAGGTCTAATGGGTAAGCTACATAAGCAATATATTGATTTTCTTCTCCAGGAACAGGCT
CGTAAGTCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCGGCCCCTGCTTCTTCAGGCGGAACTCCAGGTTGAGGAGTT
ACTCGAAATGCTGCCAAAATATCAGTATCCTTGGTTTCATACTCAGGAGTATAATAAGTCAATTTATAATCTTTAACACCAGCTTTGAATCCAACACTTG
CTTTAGTCTCTGTTTGTGGTGACATAAATCCCTCCCTACAACTCATGAATTAAGAATTCTCACAACAACAAGGTCTACTCGACATGAATTAGGCGTTAAT
GAAACTTTTTACAGGAACCTTTCACAAAATTCCCAACTAATAGTAAAATTATCAACTAATCAGAATGCTTGATTATTAGACCATGGTATTTGATTCGGC