« Back to Lactuca sativa search


Detailed information on CNT30356484


BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30623993Lactuca sativaDaucus carota19.3448.7683.9118forward
CNT30334728Lactuca sativaCynara cardunculus69.6749.7784.71425forward

Expression of CNT30356484

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VGKNLLLNHMSYDSLHHIDHNQPSSKLNTTHYSIKLP*

Sequence

>CNT30356484
AGTAGGGAAAAATTTATTGTTGAATCACATGTCATATGATTCTTTACATCATATCGATCATAATCAACCGTCTTCCAAATTAAATACAACACACTATAGT
ATTAAACTTCCATAAATTGAAAAGATGCATATCTATGCGCATTGGAAGCCGGAGGGAACTTTCTTTCCACAATAGTTAAGCAACAGGCTCAAAGAGACCG
GAACATTGAGGTGGATTCCCAAGACATTAGCTTTAATTGCAGTGCAAAGACATACTGCAGCCTCAAGATCGGCGAGGCCTTGGATTAGGGTACAACATGG
TGTCTTTGGTGGGGTTCCGACGACCAGGTGGACAAGGTCATTGAGCAATTTAGCACAAACACCCAATTTGAGAGTGTCTTTTGGGCAACTTGCTTTGGGA
GGGAGTAAAGGAGTTGGAGGTTTCGGTGACGGTGGGCACGACGATGGTGGCGGTGGTGGGCAGCCTTTTGGGGTATGAGTGGATGTTACCAAAGTGAAAA
AAAGAAGATTGAAGGTAAGGAGAAAAGCTGTTGTTGCCAAAGCTCTTGAAGCCATTTTTAAATGCTTTGGTTTCTTACAAGTAGAAAGTGTTGTAACCCA
ATTTGTTTTG