Detailed information on CNT30356457


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515299Lactuca sativaJuglans regia21.0223.0986.09115forward
CNT30379120Lactuca sativaManihot esculenta24.3116.2480.45133forward
CNT3090667Lactuca sativaSolanum tuberosum19.0122.9186.54104forward
CNT30621639Lactuca sativaCajanus cajan21.5712.0881.36118forward
CNT3037096Lactuca sativaCucumis melo19.5638.6384.11107forward
CNT30551639Lactuca sativaOryza brachyantha19.0125.3783.65104forward
CNT30723266Lactuca sativaLupinus angustifolius21.7617.8182.35119forward

Expression of CNT30356457

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDMVCAASVGRRRHNLFRQPYHNHPINTSLTFYIGTN*

>peptide 2 (37 aa)
MIKTQERLKVRDLFLEFVLISHTVRVVRLFLELVVTQ*

Sequence

>CNT30356457
CCCATAAATAGACAGAAAATCACACATATATGGATATGGTGTGTGCCGCAAGCGTAGGCCGCCGGCGACACAACTTATTTCGTCAACCTTACCACAACCA
CCCCATTAACACGAGTCTTACCTTTTATATAGGAACTAATTAAACTCAACTCACTCACTCAACTCAGTTTATTCGGAAACAACTCAGATGATAACCGGGA
AGTCATCCAACGTCCAAACATCACCTGCTGACTCACCACCGAGTCCACCAAACTGAGTCAACTCATGATCAAGACCCAAGAACGTCTCAAGGTTCGAGAT
CTGTTCCTTGAATTCGTGCTCATCAGCCACACTGTTCGAGTAGTAAGATTGTTTTTGGAACTGGTCGTAACTCAGTAATGTAGGCTTGCGCAGCTTCTTC
AGCGGTGTTGAATGTACCGAGCCAGACTCGGACACCCTGCTGTGGGTCTCGGATCTCCGCCGCCCATTTTCCCCATGGCCGCTGCCTGATCCCTCTGTAC
TTGTTCTTCCTCGCTTTTGGCTTCTTCTCGATAGGTTGTGATTTTTC