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Detailed information on CNT30356368


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550295Lactuca sativaIpomoea triloba89.2698.6394.811155forward
CNT30730396Lactuca sativaCorchorus capsularis100.1581.2594.981296forward
CNT30585954Lactuca sativaMusa acuminata96.2179.692.211245forward
CNT3089434Lactuca sativaVigna radiata91.8174.1193.351188forward
CNT30544870Lactuca sativaBrassica napus10096.1494.281294reverse complement
CNT30234560Lactuca sativaBrassica oleracea80.9154.994.751047reverse complement
CNT30265942Lactuca sativaBrassica rapa10070.7194.281294forward
CNT30206613Lactuca sativaHelianthus annuus86.0164.0497.661113forward
CNT3027145Lactuca sativaPopulus trichocarpa93.5974.0296.041211reverse complement

Expression of CNT30356368

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNRKPGYGAKLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

>peptide 2 (40 aa)
TRTKESDMCASQRVSKPARRKEADWRDPPSGVHRRPTLIF*

Sequence

>CNT30356368
ACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGCAAGGCGTAAGGAAGCTGATTGGCGGGATCCCCCTAGCGGGGTGCACC
GCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGA
AACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCC
TCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGGTGCGAGTTCTATCGGGTAAAGCGAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCT
CAAACTTTAAATAGGTAGGACGGTGCGGCTGCTTTGTTGAGCCGTACCACGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG
CGGGATGAACCGGAAGCCGGGTTACGGTGCCAAACTACGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGA
AGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGTGACCTACACCCGGCCGTCGG
GGCAAGTGCCAGGCCCCGATGAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTTGGGCGTGAGCCTGGGCGGAGCGGCCGTCGGTGCGGATCTTGGTGGT
AGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGACGGGGG
AAGCCCGTTAGATAGCGCGTTTCATGTGAGCTTCGAAAGGGAATCGAGTTTAAATTCCGGAACCGGGACGTGGCGGCTGACGACAACGTTAGGGAGTCCG
GAGACGTCGGCGGGGGCCTCGGAAAGCGTTATCTTTTCTGTTTAACAACCTACCCACCCTGGAAACGACTCTCTCGGAGGTAGGGTCCAGCGGCTGGAAG
AGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCTCCCACGCCCGGTCGTACTCATAACCGCATCA
GGTCTCCAAGCTGAACAACCTTTGGTCGATGGAACAATGTAGGCAAGGGAAGTCAGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCT