Detailed information on CNT30356256


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 3e-88

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532757Lactuca sativaEucalyptus grandis44.452.2780230forward
CNT30517675Lactuca sativaJuglans regia21.4318.3881.98111forward
CNT30712809Lactuca sativaGlycine max42.8666.2780.18222forward
CNT3098615Lactuca sativaSolanum tuberosum25.2925.5480.92131forward
CNT3085161Lactuca sativaVigna radiata40.3529.8184.21209forward
CNT30555279Lactuca sativaOryza glaberrima39.1965.0685.22203forward
CNT30247895Lactuca sativaAvena sativa39.7727.4781.55206forward
CNT30136973Lactuca sativaLolium perenne21.8126.983.19113forward
CNT30953Lactuca sativaZea mays39.7721.7882.04206forward
CNT30217674Lactuca sativaKalanchoe fedtschenkoi26.4538.3883.21137forward
CNT30210906Lactuca sativaHelianthus annuus41.5182.3883.72215forward
CNT30716286Lactuca sativaMalus domestica golden42.0816.6983.49218forward
CNT30597159Lactuca sativaOryza meridionalis27.6119.7584.62143forward
CNT30106559Lactuca sativaOryza longistaminata17.7641.0784.7892forward
CNT30117950Lactuca sativaOryza nivara43.2427.0281.25224forward

Expression of CNT30356256

Peptides detected in this lncRNA

>peptide 1 (68 aa)
VRFVLIVATAAFTSFGTTSPLYIKQHAMYFPWRGSHFAIIDDGSNAVFVISATDNCSWYAFSAEMTGA*

>peptide 2 (52 aa)
MKWIRGYGTRFVWNSVTSTREWVERTLLYGSTTEVETCGDGYTVNPSFDFLP*

>peptide 3 (53 aa)
PLRFNRRHRSIHILRNNITSVHQTTRHVFPMARVALRHHRRRLKRRVCYLRHR*

Sequence

>CNT30356256
GTCCGCTTCGTTTTAATCGTCGCCACCGCAGCATTCACATCCTTCGGAACAACATCACCTCTGTACATCAAACAACACGCCATGTATTTCCCATGGCGAG
GGTCGCACTTCGCCATCATCGACGACGGCTCAAACGCCGTGTTTGTTATCTCCGCCACAGATAATTGTTCGTGGTACGCTTTCTCGGCGGAGATGACGGG
AGCGTAGGAGGAGAGCATGAAGTGGATTCGAGGGTATGGGACGAGATTTGTTTGGAATTCGGTAACGTCGACGAGAGAGTGGGTGGAGAGAACGCTGTTG
TACGGCTCAACGACGGAGGTGGAAACTTGTGGCGACGGATACACCGTGAACCCAAGCTTTGACTTTTTACCATAGTCAACGGAGAGACGTTCGAGAAGAA
GCGAGCCGAGACCGGAGCCAGTTCCGCCGCCGACGGCGTTGAACACCAGGAAGCCTTGAAGACCGGTGCAATTGTCGGCGAGTTTTCGGATGCGATCTAA
ACACAAGTCTACGATTTC