« Back to Lactuca sativa search


Detailed information on CNT30355986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550233Lactuca sativaIpomoea triloba60.458.592.061649forward
CNT30619307Lactuca sativaSesamum indicum54.488.6690.31485forward
CNT30507933Lactuca sativaNicotiana attenuata60.7781.692.771659forward
CNT30711221Lactuca sativaGlycine max50.18100.2992.631370forward
CNT30163337Lactuca sativaPistacia vera49.7498.1290.871358forward
CNT30545324Lactuca sativaBrassica napus54.5185.7190.991488reverse complement
CNT30311297Lactuca sativaCamelina sativa59.8981.1890.461635forward
CNT3075807Lactuca sativaBrassica juncea60.481.0391.391649forward
CNT30217525Lactuca sativaKalanchoe fedtschenkoi60.4491.9787.71650forward
CNT30574469Lactuca sativaVitis vinifera52.8978.7891.071444forward
CNT3023562Lactuca sativaPopulus trichocarpa60.8174.3791.931660reverse complement
CNT30496898Lactuca sativaDigitaria exilis51.4377.6188.821404forward
CNT30176196Lactuca sativaVigna angularis53.9297.9489.541472reverse complement

Expression of CNT30355986

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNGLMRFPLSLSTIKRNHSEGNGLGRISGERRCC*

>peptide 2 (45 aa)
MVPVDANAIRFLPSALNVRVKKFNQARVNNRSNYDSLKVAKCLVI*

>peptide 3 (43 aa)
MMLRPRPQVRRDYPLRLSILISGDKETYKNSLSNGKRTGISPA*

>peptide 4 (35 aa)
MKYNSHQVAGRILCRRLKYATGYCKWQSGLAATIH*

>peptide 5 (31 aa)
MRRVCPLPVCRPTVGASAPKGTCRWLSLCDG*

>peptide 6 (31 aa)
MIRVLKASLRSVYISMGQHHWISVLLRWPSG*

>peptide 7 (33 aa)
MCASQRVSKPARRKEADWRDPPSGVHRRPTLIF*

>peptide 8 (34 aa)
MPIFLDPRPASAGRSGRRTLSGGEFGWGGTCFKR*

>peptide 9 (36 aa)
TPYLPNGLGWCWGQIMASRACVSVGLNKSSLRRTHG*

Sequence

>CNT30355986
CCACACCATACCTCCCCAACGGGTTGGGATGGTGTTGGGGGCAGATAATGGCCTCCCGTGCTTGTGTTTCGGTTGGCCTAAATAAGAGTTCCCTTCGGCG
GACACACGGCTAGTGGTGGTTGAATAGACCCTCGTCTTTTGTTGTGTGTCGTGAGCTGTAAGGGTATCCCTCATCAAAGACCCCATTGTATCGTCTTCGG
ATGATGCTTCGACCCCGACCTCAGGTCAGGCGGGACTACCCACTGCGTTTAAGCATATTAATAAGCGGAGACAAAGAAACCTACAAGAATTCCCTTAGTA
ACGGCAAGCGAACCGGGATCAGCCCAGCTTGAAAATTGGGCCACCTCGCTATCCGAAATGTAGTCTGGAGAAGCGTCCTCAGCGGCGGAACGGGCCCAAG
TCCCCTGGAAGGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCTGCGAGTCGGGTTGTTTGGGAATGCA
GCCCCAATAGGGCGGTAAATTCCGTCCAAGGCTAAATACCGGCGTGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGA
GAGTCAAAGAGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGCAAGGCGTAAGGAAGCTGATTGGCGGGATCCCCCTAGCGGGGTGCACCGC
CGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAA
CTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTC
CGAAGTTTCCCTCAGGATAGCTGGAGCCCGGGTGCGAGTTCTATCGGGTAAAGCGAATGATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAG
CATGGGACAACATCATTGGATTTCGGTCCTATTACGTTGGCCTTCGGGATAGGAGTAATGATTAACAGGGACAGTAGGGTCCAGCGGCTGGAAGAGCACC
GCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCTCCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTC
CAAGCTGAACAACCTTTGGTCGATGGAACAATGTAGGCAAGGGAAGTCAGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTTGAGGGCTGGGC
ACGGGGGTCCCAGTCCCGAACCCGTCGACTGTTGGCGGACTGCTTGAGCTGCTTCCGTGGCGAGAGCGGGTCGCTGCGTGCCAGCCGGGGGACGGACTGG
GAACGGCTCCTTCGGGGGGCTTCCCCGGGCGTCGAACAGCTAACTTAGAACTAGTACGAAAAAGGGGAATCTGTCTGTTTAATTAAAACAAATCATTTCG
ATGGTCCCTGTGGATGCTAACGCAATTCGATTTCTGCCCAGTGCTCTGAATGTTAGAGTGAAGAAATTCAACCAAGCACGGGTAAACAACAGGAGTAACT
ATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAATGAGATTCCCACTGTCCCTGTCTACTATCAAGCGAAA
CCACAGTGAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGATGCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGT
ATAAGTAGGAGCCTTCGGGCGAAAGTGAAATACCACTACTTTTAACGTTATTTTAGTTATTCCGTGAATTGGAAGCGGGGCAATGCCCATCTTTTTGGAC
CCAAGGCCTGCTTCGGCGGGCCGATCCGGGCGGAGGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATGTTTTAAAAGATAACGCAGGTGTACTA
AGATGAGCTCAACGAGAACAGAAATCTCGTGTGTAATAGAAGGGTAAAATCTCGTTTGATTCTGATTTCCGGTACGAATACGAACTGTGAAAGCGTGGCC
TAACGATCCTTTAGACCTTTGGAATTTGAAACTAGAGGTGTCAGAAAATTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTG
GTTTTTTATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAATAGAATTCACCAAGTGTTGGATTGTTCACCCATCAGTAGGAACGTGAGCTGGGTTTAG
ACCGTCGTGAGATAGATTAGTTTTACCATACTGATGGCAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCATTGATTCTCACAATTGGTCATC
GCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTACGACTGAACGCATCTAAGTCAGAATCCGGGCTAGATGCGACGTGTGTGCCCG
CTGCCTGTTTGCCGACCAACAGTAGGGGCCTCGGCCCCTAAAGGCACGTGTCGTTGGCTAAGCCTGTGCGACGGATGAGTTGTGTAGGCCGCCATGAAGT
ATAATTCCCATCAAGTGGCGGGTAGAATCCTTTGCAGACGACTTAAATACGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTA
AGATTCAACCCTGTGTCGCTCAGATTCGTC