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Detailed information on CNT30355977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318007Lactuca sativaCorylus avellana87.3243.7594.381529reverse complement
CNT30519077Lactuca sativaJuglans regia87.3282.2994.241529reverse complement
CNT30619309Lactuca sativaSesamum indicum73.4458.5391.991286reverse complement
CNT30283199Lactuca sativaChenopodium quinoa87.1556.0894.231526forward
CNT3021662Lactuca sativaCitrullus lanatus87.3837.6494.771530forward
CNT30508033Lactuca sativaNicotiana attenuata86.8645.6893.751521forward
CNT30711135Lactuca sativaGlycine max87.3848.1693.531530forward
CNT30588049Lactuca sativaMusa acuminata80.365.7691.111406forward
CNT30544747Lactuca sativaBrassica napus87.3259.793.071529reverse complement
CNT30311531Lactuca sativaCamelina sativa87.3241.990.911529forward
CNT30265707Lactuca sativaBrassica rapa87.3276.9593.21529reverse complement
CNT30445720Lactuca sativaSaccharum spontaneum82.0767.5690.881437reverse complement
CNT30334961Lactuca sativaCynara cardunculus72.759.9393.791273forward

Expression of CNT30355977

Peptides detected in this lncRNA

>peptide 1 (39 aa)
PRPQVRRDYPLRLSILISGDKETYKNSLSNGKRTGISPA*

>peptide 2 (33 aa)
MCASQRVSKPARRKEADWRDPPSGVHRRPTLIF*

>peptide 3 (40 aa)
MNRKPGYGAKLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

Sequence

>CNT30355977
ACCCCGACCTCAGGTCAGGCGGGACTACCCACTGCGTTTAAGCATATTAATAAGCGGAGACAAAGAAACCTACAAGAATTCCCTTAGTAACGGCAAGCGA
ACCGGGATCAGCCCAGCTTGAAAATTGGGCCACCTCGCTATCCGAAATGTAGTCTGGAGAAGCGTCCTCAGCGGCGGAACGGGCCCAAGTCCCCTGGAAG
GGGGCGCTGTCTGCGAGTCGGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGCAAGGCGTAAGGAAGCTGATTGGCGGGATCCCCCTAGCG
GGGTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAA
GCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAG
CTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGGTGCGAGTTCTATCGGGTAAAGCGAATGATTAGAGGCATCGGGGGCGCAACGCCCTCG
ACCTATTCTCAAACTTTAAATAGGTAGGACGGTGCGGCTGCTTTGTTGAGCCGTACCACGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAA
CTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCAAACTACGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGT
GGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGCGTGACCTACACCC
GGCCGTCGGGGCAAGTGCCAGGCCCCGATGAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTTGGGCGTGAGCCTGGGCGGAGCGGCCGTCGGTGCGGAT
CTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAG
AGACGGGGGAAGCCCGTTAGATAGCGCGTTTCATGTGAGCTTCGAAAGGGAATCGAGTTTAAATTCCGGAACCGGGACGTGGCGGCTGACGACAACGTTA
GGGAGTCCGGAGACGTCGGCGGGGGCCTCGGAAAGCGTTATCTTTTCTGTTTAACAACCTACCCACCCTGGAAACGACTCTCTCGGAGGGTCCAGCGGCT
GGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCTCCCACGCCCGGTCGTACTCATAACCG
CATCAGGTCTCCAAGCTGAACAACCTTTGGTCGATGGAACAATGTAGGCAAGGGAAGTCAGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTT
GAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGACTGTTGGCGGACTGCTTGAGCTGCTTCCGTGGCGAGAGCGGGTCGCTGCGTGCCAGCCGGG
GGACGGACTGGGAACGGCTCCTTCGGGGGGCTTCCCCGGGCGTCGAACAGCTAACTTAGAACTAGTACGAAAAAGGGGAATCTGTCTGTTTAATTAAAAC
AAATCATTTCGATGGTCCCTGTGGATGCTAACGCAATGTGATTTCGGTCCA