Detailed information on CNT30355925


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Lactuca sativaQuercus lobata57.3761.0581.71257forward
CNT30381108Lactuca sativaManihot esculenta47.9938.5380.93215forward
CNT30485883Lactuca sativaOlea europaea14.5122.4186.1565forward
CNT30597791Lactuca sativaFraxinus excelsior21.6532.4485.5797forward
CNT3030385Lactuca sativaTheobroma cacao18.7521.0586.984forward
CNT3022855Lactuca sativaPopulus trichocarpa49.3331.8982.35221forward
CNT30114130Lactuca sativaFicus carica21.2115.1388.4295forward

Expression of CNT30355925

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SFKINSTQALDMLPYSLSTCLVARSLSGVRRSFSSTCSNQQFPTV*

Sequence

>CNT30355925
TTTCATTTAAGATAAACAGCACACAAGCACTTGACATGTTACCATATTCACTAAGCACTTGTCTCGTAGCCCGCAGTTTATCAGGCGTAAGGCGTAGTTT
TTCCTCCACTTGTTCCAATCAGCAATTCCCAACGGTTTAAAGGCCTCTACCAAGCTCTTTTCAATGTGTTTTGAGATAAGTCCAGGAACATCTTTGAGGA
GATGAAATGTAAGCCCGACCTCACGAAGGTGCCCATCAATTGCACCTTCGCTATCTGGAAGAATAGTTTGGGCAGCAGAAATTAACTCAAAAAGTGGCTT
TTCCACATCGGGCAATGGGTCAGAACCTACTATAATAGCTGCTGCACCATCGCCAAACAAAGCTTGACCTACAAGGCTATCAAGATGAGTCTCATTAGGT
CCACGGAAAGTAACTGCGGTGATCTCGGAGCAAACAACCAATACACGT