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Detailed information on CNT30355776


BLAST search results

BLAST vs Swiss-Prot:
sp|P48385|CHSY_CALCH, E-value = 1e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281985Lactuca sativaChenopodium quinoa40.179.7684.12233forward
CNT30507146Lactuca sativaNicotiana attenuata30.3416.5482.95176forward
CNT3045136Lactuca sativaPrunus dulcis5046.6282.76290forward
CNT30156261Lactuca sativaPistacia vera47.4136.4281.45275forward
CNT3096085Lactuca sativaSolanum tuberosum33.4540.7682.99194forward
CNT30192407Lactuca sativaSecale cereale40.1734.8880.69233forward
CNT30564019Lactuca sativaActinidia chinensis42.4133.282.52246forward
CNT3088050Lactuca sativaVigna radiata27.7632.0785.09161forward
CNT30466546Lactuca sativaSaccharum spontaneum35.1776.6982.84204forward
CNT30610059Lactuca sativaGossypium raimondii49.4842.0281.18287forward
CNT30680228Lactuca sativaTriticum urartu30.6937.7179.78178forward
CNT30365392Lactuca sativaSorghum bicolor35.1735.1783.33204forward
CNT30151821Lactuca sativaPrunus persica5050.3582.76290forward
CNT30705527Lactuca sativaPrunus avium33.4541.984.02194forward
CNT30114121Lactuca sativaFicus carica49.4817.7682.58287forward

Expression of CNT30355776

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MYSQRLGFSLRNSSVKCMYRFLIIDLSPASFIYMYTLLKQNPTHNIMLIQIQIDHHFYFFLKDLKTTSQKSFATIYLWPVLSHEKLN

>peptide 2 (74 aa)
MSTPEVVQKMRWVILDLGWPHSLMALVGRSHVLAKVGVLFEKLLCQMHVSFSYHRLVTCKFHIHVYFVKTKPYT*

>peptide 3 (29 aa)
MGDFGFRLAPFFDGFGRKEPCTRKGWGSL*

>peptide 4 (62 aa)
LSNEGIKVGVVRATEGNRCNLRANHKNTSTLVVLSEVLGESENRSAGETPLLVHHEAFDRRT*

>peptide 5 (71 aa)
ACPTRESRWVSLGPRKVTAVISEQTTRTRAPLLFSARSLASRRTVPPAKHPCWYIMKRLTEGRRPRSLVSW*

Sequence

>CNT30355776
GCTTGTCCAACGAGGGAATCAAGGTGGGTGTCGTTAGGGCCACGGAAGGTAACCGCTGTAATCTCAGAGCAAACCACAAGAACACGAGCACCCTTGTTGT
TCTCAGCGAGGTCCTTGGCGAGTCGGAGAACCGTTCCGCCGGCGAAACACCCTTGTTGGTACATCATGAAGCGTTTGACAGAAGGACGTAGGCCGAGGAG
CTTAGTGAGCTGGTAATCGGCGCCGGGCATGTCAACGCCGGAGGTGGTGCAGAAGATGAGATGGGTGATTTTGGATTTAGGTTGGCCCCATTCTTTGATG
GCTTTGGTCGGAAGGAGCCATGTACTCGCAAAGGTTGGGGTTCTCTTTGAGAAACTCCTCTGTCAAATGCATGTATCGTTTTCTTATCATAGACTTGTCA
CCTGCAAGTTTCATATACATGTATACTTTGTTAAAACAAAACCCTACACATAACATCATGCTGATACAAATACAAATCGATCATCACTTTTATTTTTTTT
TGAAAGATCTGAAAACTACGTCTCAGAAAAGTTTTGCCACAATATATCTTTGGCCTGTGTTATCTCACGAAAAACTCAAT