Detailed information on CNT30355705


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 1e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522907Lactuca sativaSetaria italica40.2726.0280.27147forward
CNT30536141Lactuca sativaEucalyptus grandis32.8833.0682.5120forward
CNT30181670Lactuca sativaSecale cereale36.9947.282.22135forward
CNT30230974Lactuca sativaAnanas comosus61.134.8480.27223forward
CNT30714885Lactuca sativaMalus domestica golden56.1642.0981.46205forward
CNT30597158Lactuca sativaOryza meridionalis60.2732.0779.55220forward
CNT30371509Lactuca sativaOryza glumipatula60.273879.55220forward
CNT30105031Lactuca sativaOryza longistaminata60.2728.5380.45220forward
CNT3023479Lactuca sativaPopulus trichocarpa49.8650.782.97182forward
CNT30149302Lactuca sativaBrachypodium distachyon64.6639.4679.24236forward

Expression of CNT30355705

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDNPLATVDLNNLTFTALVGTTNNLYLIVFSDWD*

>peptide 2 (47 aa)
RSSNDFLSLSSLSLVTTTFEGLMPTLTVCPLTFSRVIRSIWITHLRR*

Sequence

>CNT30355705
CCGGTCAAGCAACGACTTCCTGTCCTTATCAAGCTTGAGCTTAGTGACGACAACCTTTGAAGGGTTGATGCCTACATTGACTGTTTGCCCATTAACCTTC
TCACGAGTGATCCGCTCGATATGGATAACCCACTTGCGACGGTAGACCTGAACAACCTTACCTTCACGGCCCTTGTAGGTACCACGAACAACCTGTACCT
CATCGTCTTTTCGGACTGGGATTGACCGGACGTTGTACTTGCTGCGCAGCTCTGTAGAAAGGGGTGCGCTCATCAACACACGGCGGACGCTGGATGGCGC
GGAGAAGTGCGCCTTCCTACATTTCCGGCGAGAGCTGGTGACTCTTGGATTGAACACACATACTC