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Detailed information on CNT30355674


BLAST search results

BLAST vs Swiss-Prot:
sp|P48706|RBL_LACSA, E-value = 2e-174

BLAST vs NONCODE:
NONMEST005601, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Lactuca sativaOryza sativa80.3512.8487.18593forward
CNT30678279Lactuca sativaSetaria viridis46.7540.2186.96345forward
CNT30201083Lactuca sativaPisum sativum83.628.991.09617forward
CNT30502302Lactuca sativaNicotiana attenuata20.0511.9781.76148reverse complement
CNT30181337Lactuca sativaSecale cereale80.3527.5788.36593forward
CNT30290424Lactuca sativaTriticum aestivum80.3537.0988.36593forward
CNT30225281Lactuca sativaHordeum vulgare42.9594.6388.64317forward
CNT30565170Lactuca sativaActinidia chinensis77.2449.9194.74570forward
CNT3089355Lactuca sativaVigna radiata43.553.8690.97321forward
CNT30541452Lactuca sativaBrassica napus82.7936.6591.98611forward
CNT30239038Lactuca sativaBrassica oleracea76.6945.3991.87566forward
CNT30554212Lactuca sativaOryza glaberrima80.3515.7287.35593forward
CNT30444217Lactuca sativaAegilops tauschii45.859.7288.17338forward
CNT30257373Lactuca sativaAvena sativa57.7264.1688.5426forward
CNT3060115Lactuca sativaArabidopsis lyrata82.7925.7791.98611forward
CNT30265852Lactuca sativaBrassica rapa11.9220.1490.9188forward
CNT302912Lactuca sativaZea mays80.3574.0387.69593forward
CNT30606537Lactuca sativaGossypium raimondii43.3619.0489.38320forward
CNT30682029Lactuca sativaTriticum urartu80.3556.2188.36593forward
CNT30477828Lactuca sativaArabidopsis halleri50.5473.2893.03373forward
CNT3058691Lactuca sativaAmborella trichopoda30.2249.8991.93223forward
CNT30121217Lactuca sativaCitrus clementina45.5337.4692.56336forward
CNT30100001Lactuca sativaOryza rufipogon2982.9587.85214forward
CNT30578317Lactuca sativaOryza barthii40.1161.1683.78296forward

Expression of CNT30355674

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHYDRNSQFSGKYSPFHHFFACTRSSIQVMPFDFTCFSL*

Sequence

>CNT30355674
AAAGTGATTTCTCTTTCCCCTTCAAGTTTACCTACTACGGTACCGGAATGAATATGATCTCCACCAGACATACGTAACGCTTTAGCTAGTACACGGAAGT
GTATACCATGATTCTTCTGTCTATCAATAACTGCATGCATTGCGCGGTGGATGTGAAGAAGTAGACCATTATCTCGGCAATAATGAGCCAAGCTAGTATT
TGCAGTGAATCCCCCTGTTAGGTAGTCATGCATTACGATAGGAACTCCCAATTCTCTGGCAAATATAGCCCTTTTCATCATTTCTTCGCATGTACCCGCA
GTAGCATTCAAGTAATGCCCTTTGATTTCACCTGTTTCAGCTTGTGATTTAAAAATAGCTTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATG
GTTGGGAGTTCACGTTCTCATCATCTTTAGTAAAATCAAGGCCACCACGAAGACATTCATAAACAGCTCTACCGTAGTTTTTAGCGGATAACCCCAATTT
AGGTTTAATAGTACATCCCAACAGGGGACGACCATACTTGTTCAATTTATCTCTCTCAACTTGGATGCCGTGAGGCGGACCTTGGAAAGTTTTAACATAC
GCAGTAGGGATTCGCAAATCTTCCAGACGAACAGGCTCGATTCCATAGCATCGCCCTTTGTAACGATCAAGGCTCGTAAGTCCATCGGTCCACACAGTTG
TCCATGTACCAGTAGAAGATTCGGCAGCTACTGCGGCC