Detailed information on CNT30355633


BLAST search results

BLAST vs Swiss-Prot:
sp|P30078|CHSY_MALDO, E-value = 6e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381286Lactuca sativaManihot esculenta22.8916.5186.4125forward
CNT30524897Lactuca sativaPhaseolus vulgaris39.1934.8581.31214forward
CNT30628726Lactuca sativaVigna unguiculata39.1919.4982.71214forward
CNT30196025Lactuca sativaPisum sativum27.2913.2185.91149forward
CNT30156257Lactuca sativaPistacia vera34.6213.1884.66189forward
CNT30171320Lactuca sativaTrifolium pratense21.2527.185.34116forward
CNT30145784Lactuca sativaMedicago truncatula33.8817.0782.7185forward
CNT30606750Lactuca sativaGossypium raimondii40.2929.2282.73220forward
CNT30646903Lactuca sativaRosa chinensis40.8416.8784.3223forward
CNT30644974Lactuca sativaCannabis sativa49.6333.7581.55271forward

Expression of CNT30355633

Peptides detected in this lncRNA

>peptide 1 (82 aa)
SFKINSTQALDMLPYSLSTCLVARSLSGVRRSFSSTWSKIAGPPGCAIQKSEFQSAIPNGLKASTKLFSMCFEISPGTSLRR*

Sequence

>CNT30355633
TTTCATTTAAGATAAACAGCACACAAGCACTTGACATGTTACCATATTCACTAAGCACTTGTCTCGTAGCCCGCAGTTTATCAGGCGTAAGGCGTAGTTT
TTCCTCCACTTGGTCCAAGATCGCAGGGCCACCTGGATGTGCGATCCAAAAAAGTGAGTTCCAATCAGCAATTCCCAACGGTTTAAAGGCCTCTACCAAG
CTCTTTTCAATGTGTTTTGAGATAAGTCCAGGAACATCTTTGAGGAGATGAAATGTAAGCCCGACCTCACGAAGAATAGTTTGGGCAGCAGAAATTAACT
CAAAAAGTGGCTTTTCCACATCGGGCAATGGGTCAGAACCTACTATAATAGCTGCTGCACCATCGCCAAACAAAGCTTGACCTACAAGGCTATCAAGATG
AGTCTCATTAGGTCCACGGAAAGTAACTGCGGTGATCTCGGAGCAAACAACCAATACACGTGCACCCTTGTTGTTCTCAGCTAAGTCCTTGGCCAAACGA
AGAACAGTGCCACCAGCAAAACACCCTTGTTGATACATCATGAAGC