Detailed information on CNT30355601


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 7e-132

BLAST vs NONCODE:
NONBNAT003157, E-value = 2e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30637620Lactuca sativaCapsicum annuum31.0912.2986.86236forward
CNT30647369Lactuca sativaRosa chinensis90.3875.7285.42686forward
CNT30684514Lactuca sativaTriticum urartu88.6786.8484.1673forward
CNT30101006Lactuca sativaOryza rufipogon51.7856.4784.22393forward

Expression of CNT30355601

Peptides detected in this lncRNA

>peptide 1 (99 aa)
SNPNRQKIKRLDHQNTTPIISLDTLLGCGLGHLSSSRVLLVNTLDHTNSNSLTHVPHSKPSKRWVLCESLHHHRLGRHHLNHTCITILQKLGLLLKLLS*

>peptide 2 (62 aa)
MSLTANLPRGGYSAKVSTTIGLVGIILTIPASPFFKNLGSFSSSFPDRLSILVNSSWNLTAM*

>peptide 3 (30 aa)
MLSPSNPEIGTNGILSGLYPTFFKYEDTSFT

>peptide 4 (45 aa)
MMITWEVKLAAPLAGSSLEFEATYPRLMIPVSTRPTGTVPIPPIL*

Sequence

>CNT30355601
TAGTAATCCAAACAGACAGAAAATAAAAAGACTCGATCACCAAAACACAACACCTATCATATCACTTGACACCCTTCTTGGCTGCGGCCTTGGTCACCTT
AGCTCCAGTCGGGTCCTTCTTGTCAACACTCTTGATCACACCAACAGCAACAGTCTGACGCATGTCCCTCACAGCAAACCTTCCAAGAGGTGGGTACTCT
GCGAAAGTCTCCACCACCATAGGCTTGGTCGGCATCATCTTAACCATACCTGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCTTTCCTG
ATCGTCTGTCAATCTTGGTCAACAGCTCTTGGAACTTAACAGCAATGTGAGAAGTGTGGCAATCCAACACTGGAGCATAACCATTTCCGATCTGACCAGG
GTGGTTCATGATGATAACCTGGGAAGTGAAACTGGCAGCACCCTTAGCAGGATCATCCTTGGAGTTTGAGGCAACATACCCACGCTTGATGATACCTGTC
TCAACACGTCCCACTGGCACAGTTCCAATACCACCGATCTTGTAAACATCCTGAAGTGGTAGACGGAGTGGCTTGTCTGTGGGTCTCTTTGGCTCGTTGA
TCTGGTCAAGAGCTTCAAGAAGGGTTGGTCCCTTGTACCAGTCAAGGTTGGTTGACCTCTCAATCATGTTGTCACCTTCGAATCCAGAGATTGGAACGAA
TGGGATTTTGTCTGGGTTGTATCCGACCTTCTTCAAGTATGAAGACACTTCCTTCACGA