Detailed information on CNT30355468


BLAST search results

BLAST vs Swiss-Prot:
sp|A4GYN8|RR12B_POPTR, E-value = 3e-56

BLAST vs NONCODE:
NONVVIT000515, E-value = 2e-165

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677912Lactuca sativaSetaria viridis59.0444.991.69722forward
CNT3021516Lactuca sativaCitrullus lanatus44.429.5396.87543forward
CNT30524944Lactuca sativaPhaseolus vulgaris24.4530.0297.32299forward
CNT30492881Lactuca sativaOlea europaea22.5742.7989.86276forward
CNT30710142Lactuca sativaGlycine max14.3139.2496.57175forward
CNT30300194Lactuca sativaTriticum aestivum27.5616.0297.03337forward
CNT3083498Lactuca sativaVigna radiata15.1379.7488.65185reverse complement
CNT30237740Lactuca sativaBrassica oleracea28.0528.6183.09343forward
CNT3018194Lactuca sativaZea mays48.81101.8890.95597forward
CNT30610163Lactuca sativaGossypium raimondii32.4674.6288.16397forward
CNT30684722Lactuca sativaTriticum urartu40.3146.287.63493forward
CNT30351849Lactuca sativaEragrostis tef12.0236.9393.2147reverse complement
CNT30364733Lactuca sativaSorghum bicolor17.9990.1682.73220forward
CNT30416238Lactuca sativaPapaver somniferum47.175.296.7576forward
CNT30100515Lactuca sativaOryza rufipogon18.488.5890.67225reverse complement
CNT30578120Lactuca sativaOryza barthii9.9821.18100122forward
CNT30604848Lactuca sativaOryza punctata27.64103.3684.91338reverse complement
CNT30723626Lactuca sativaLupinus angustifolius12.6726.7288.39155reverse complement

Expression of CNT30355468

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRLCTLRIGIHFLKDPGFRALVGLRDPFDDLCCVEGISI*

>peptide 2 (35 aa)
MRFSPHTAPRSILSKLLDPFPRSRIPSLLPLRPEE*

>peptide 3 (65 aa)
MRIQSRSYNKNKRSFSINPLAPHSSRIRKILFKFEFVHLESEFFYFIFIYLFYFHFYLLILLIFI*

Sequence

>CNT30355468
TGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAA
GTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCG
GGTAAATCCTTAACCCTCCCCCCTCTTACTAAGACTACAGAATGTTCTTGTGAATTATGGCCAATACCGGGTATATAAGCAGTGATTTCAAATCCAGAGG
TTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTTGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAG
AACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTTATTGGATCCTTTTCCGCGTTCGAGAATCCCCTCCCTTCTTCCACT
CCGTCCCGAAGAGTAACTAGGACCAATTTAGTCACGTTTTCATGTTCCAATTGAACACTTTCCGTTTTTGATTATTCTCTTTACCAAACATATGCGGATC
CAATCACGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCCTTGCCCCTCATTCTTCGAGAATCAGAAAGATCCTTTTCAAGTTTGAATTTG
TTCATTTGGAATCTGAGTTCTTCTACTTCATTTTTATTTACTTATTTTATTTTCATTTTTATTTACTTATTTTATTGATTTTTATTTAATATCAATATTT
TTGCCTCTCTTTTTTTATATTATTCCTTAAGTCCCATAGGTTTGATCCTTTAGAATTGGACTCATTTTCTCATTGAGCGAAGGGTACGAAATAAATCAGA
TTGATTAAAAGCACTATGTGAAATATTCGGTTTTTTCCTCTTCCTCTATCCCATAGGTACAGTGTTTGAATCAATCGAGAACCTTTTCTTCTGTCTGAAT
CGATATTATTCCATTCCAATTCCTTCCCGATACCTCTCAAGGAAAATCTCGAATTGGATCCTAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTAT
GCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGAT
ATCTATATAATACGATCGATTGC