CANTATAdb - search

Detailed information on CNT30355449

BLAST search results

BLAST vs Swiss-Prot:
sp|P48390|CHS1_GERHY, E-value = 5e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3074040	Lactuca sativa	Brassica juncea	46.76	60.41	81.27	267	forward

Expression of CNT30355449

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTAAAPSPKRACPTRESRWVSLGPRKVTAVISEQTTRTRAPLLFSASV*

>peptide 2 (74 aa)
MSTPEVVQKMRWVILDLGWPHSLMALVAASLPSLGTSTTTTSCLASREGAMYSQRLGFSLRNSSVKCMYRFLIID

>peptide 3 (63 aa)
MGDFGFRLAPFFDGFGRGFFTELGDFDNHHVLSGVEGRSHVLAKVGVLFEKLLCQMHVSFSYHR

Sequence

>CNT30355449
CTGGAACATCCTTAAGGAGATGAAAAGTTAGCCCCACCTCCCTCAAATGTCCGTCGATGGCTCCCTCGGAGTCAGGTAAGATCGTCTGAGCCGCAGACAC
CATCTCGAACAACGGCCGTTCAATCGTCAAGTCAGGGTCCGAACCCACGATGACCGCCGCAGCTCCATCCCCGAAAAGAGCTTGTCCAACGAGGGAATCA
AGGTGGGTGTCGTTAGGGCCACGGAAGGTAACCGCTGTAATCTCAGAGCAAACCACAAGAACACGAGCACCCTTGTTGTTCTCAGCGAGCGTTTGACAGA
AGGACGTAGGCCGAGGAGCTTAGTGAGCTGGTAATCGGCGCCGGGCATGTCAACGCCGGAGGTGGTGCAGAAGATGAGATGGGTGATTTTGGATTTAGGT
TGGCCCCATTCTTTGATGGCTTTGGTCGCGGCTTCTTTACCGAGCTTGGGGACTTCGACAACCACCACGTCTTGTCTGGCGTCGAGGGAAGGAGCCATGT
ACTCGCAAAGGTTGGGGTTCTCTTTGAGAAACTCCTCTGTCAAATGCATGTATCGTTTTCTTATCATAGAC