Detailed information on CNT30355420


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 4e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30274113Lactuca sativaChenopodium quinoa52.9158.3387.91364forward
CNT3020493Lactuca sativaCitrullus lanatus53.0523.6487.67365forward
CNT30311981Lactuca sativaCamelina sativa49.7187.0290.06342forward
CNT30600411Lactuca sativaFraxinus excelsior51.4588.2886.72354forward
CNT30151899Lactuca sativaPrunus persica53.9233.6487.6371forward

Expression of CNT30355420

Peptides detected in this lncRNA

>peptide 1 (70 aa)
LGHLSSSRVLLVNTLDHTNSNSLTHVPHSKPSKRWVLCESLHHHRLGRHHLNHTCITILQKLGLLLKLLS*

>peptide 2 (62 aa)
MSLTANLPRGGYSAKVSTTIGLVGIILTIPASPFFKNLGSFSSSFPDRLSILVNSSWNLTAM*

>peptide 3 (48 aa)
MMHLNRLDFSGQPCWSEGHNHTRLDDTCLNTSHWHSSNTTDLVNILKW*

>peptide 4 (46 aa)
MLSPSNPEIGTNGILSGLYPTFFKYEDTSFTISSYLPLEYLGVVASI

>peptide 5 (29 aa)
MGFCLGCIRPSSSMKTLPSRFPRTYPWSI*

Sequence

>CNT30355420
CTTGGTCACCTTAGCTCCAGTCGGGTCCTTCTTGTCAACACTCTTGATCACACCAACAGCAACAGTCTGACGCATGTCCCTCACAGCAAACCTTCCAAGA
GGTGGGTACTCTGCGAAAGTCTCCACCACCATAGGCTTGGTCGGCATCATCTTAACCATACCTGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAA
GCTCCTTTCCTGATCGTCTGTCAATCTTGGTCAACAGCTCTTGGAACTTAACAGCAATGTGAGAAGTGTGGCAATCCAACACTGGAGCATAACCATTTCC
GATCTGACCAGGGTGCTTCATGATGCATCTCAACAGACTTGACTTCAGTGGTCAACCCTGTTGGTCCGAAGGTCACAACCATACCAGGCTTGATGATACC
TGTCTCAACACGTCCCACTGGCACAGTTCCAATACCACCGATCTTGTAAACATCCTGAAGTGGTAGACGGAGTGGCTTGTCTGTGGGTCTCTTTGGCTCG
TTGATCTGGTCAAGAGCTTCAAGAAGGGTTGGTTGACCTCTCAATCATGTTGTCACCTTCGAATCCAGAGATTGGAACGAATGGGATTTTGTCTGGGTTG
TATCCGACCTTCTTCAAGTATGAAGACACTTCCTTCACGATTTCCTCGTACCTACCCTTGGAGTATTTAGGGGTGGTAGCATCCATCT