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Detailed information on CNT30355349


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K215|PIP22_ORYSJ, E-value = 3e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535437Lactuca sativaEucalyptus grandis17.8329.9783.18107forward
CNT30547793Lactuca sativaIpomoea triloba19.8327.1781.51119forward
CNT30698271Lactuca sativaQuercus lobata18.535.2484.68111forward
CNT30375565Lactuca sativaArabidopsis thaliana25.1761.1381.46151forward
CNT30615812Lactuca sativaSesamum indicum17.8350.2383.18107forward
CNT3070604Lactuca sativaQuercus suber25.8336.1382.58155forward
CNT30632234Lactuca sativaVigna unguiculata18.3332.1684.55110forward
CNT30159576Lactuca sativaPistacia vera34.8326.3982.3209forward
CNT3097560Lactuca sativaSolanum tuberosum21.1720.3287.4127forward
CNT30569510Lactuca sativaActinidia chinensis13.6739.4289.0282forward
CNT30592144Lactuca sativaMusa acuminata13.3334.7891.2580forward
CNT30552571Lactuca sativaOryza glaberrima11.1726.4886.5767forward
CNT30145515Lactuca sativaMedicago truncatula10.3325.3188.7162forward
CNT30435838Lactuca sativaAegilops tauschii10.6725.785.9464forward
CNT30659451Lactuca sativaTriticum dicoccoides1423.488.184forward
CNT30218729Lactuca sativaKalanchoe fedtschenkoi13.8328.6284.3483forward
CNT30213185Lactuca sativaHelianthus annuus21.3323.1580.47128forward
CNT30680173Lactuca sativaTriticum urartu10.6726.3485.9464forward
CNT30477240Lactuca sativaArabidopsis halleri21.522.484.5129forward
CNT30595794Lactuca sativaOryza meridionalis1027.486.6760forward
CNT30572629Lactuca sativaVitis vinifera10.6724.0685.9464forward
CNT30704435Lactuca sativaPrunus avium2421.7984.03144forward
CNT30318651Lactuca sativaAsparagus officinalis13.3323.683.7580forward
CNT30148622Lactuca sativaBrachypodium distachyon10.8326.6487.6965forward
CNT30116611Lactuca sativaOryza nivara1338.6191.0378forward
CNT30176173Lactuca sativaVigna angularis12.3324.2686.4974forward
CNT30113851Lactuca sativaFicus carica12.3326.7191.8974forward

Expression of CNT30355349

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MYNTALINDTFLAKNRPNVTAGDSGGAVNENEDHATEGPCDTEDANAAALIKV*

Sequence

>CNT30355349
GGTGTAGACAAGAACAAAGGTGCCGATGATCTCAGCACCGAGGCCTGTGCCTTTGTTGTAGCCGTCGGCTAATTCGTTGGCACCACCGCCGTATCTGTTG
TAGTAGGAGCTTTGGAAAGCTTTCACCAAACCCACACCACAAATTGCTCCCAAACACTGTGCTATCATGTACAACACTGCCCTAATCAACGACACCTTCC
TTGCCAAGAACAGACCGAATGTCACCGCAGGAGATTCCGGCGGTGCAGTAAACGAGAATGAAGATCATGCCACCGAAGGCCCATGCGATACCGAGGATGC
CAACGCCGCCGCACTGATCAAGGTCTAAGGCCGGGTCAGTCTGGCTTTTGTAGCCGATGACTGTTAAGACGGTCACGTAAAGGAAGAGGAGGGTGGCAAT
GAATTCGGCGATGACAGCTCTGTAGAAAGACCACTTGGTGAGCTCCTCGGCGTCGATCAAGGGCGCCGGAGGTGGGTCATGGTAGTCTTTGCCGCCATGG
TGCTCCGCCACTTCAACGTCTTTTGTCATGGCTGTCGATCCAATTAGCAGTAAGCTAGTAGTAGTAGTAGGGCTTTTACTTTTTGGAGAGAGAAGTAAGG