Detailed information on CNT30355329


BLAST search results

BLAST vs Swiss-Prot:
sp|Q332W1|PSBE_LACSA, E-value = 4e-55

BLAST vs NONCODE:
NONMEST001986, E-value = 9e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020910Lactuca sativaCitrullus lanatus31.55100.988.84224forward
CNT30286499Lactuca sativaTriticum aestivum58.7332.1391.37417forward
CNT30221820Lactuca sativaHordeum vulgare39.1514.1182.73278reverse complement
CNT30234601Lactuca sativaBrassica oleracea41.8363.0690.57297forward
CNT30555951Lactuca sativaOryza glaberrima36.6231.6791.92260forward
CNT30666971Lactuca sativaTriticum dicoccoides22.9663.9291.41163forward
CNT3025537Lactuca sativaPopulus trichocarpa17.6131.3396125forward
CNT30149874Lactuca sativaBrachypodium distachyon44.5124.5291.14316forward
CNT30574605Lactuca sativaOryza barthii40.4216.8790.24287forward
CNT30117202Lactuca sativaOryza nivara62.5423.8391.89444forward
CNT30727046Lactuca sativaLupinus angustifolius37.8933.2994.42269forward

Expression of CNT30355329

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GILPIVSAIYPTSLHISSSGHARDINSHG*

>peptide 2 (46 aa)
MVIEASKKDLLNSSSCSKESKRPVINGIPCRFSVKYSFGRGLPNTS*

Sequence

>CNT30355329
TGGAATTCTTCCAATAGTATCAGCCATTTACCCCACTTCCCTCCACATTTCATCAAGTGGTCATGCTAGAGACATAAACAGTCATGGATAATTATGAGAT
GAGATCCTTCCGAATGGGGTAAGAGAAAGAATACCTAGAACGATTAGTCTATTATTTTAGTTCTCTCTCCTTTTCTTAATTGAAGAAATAATTGGAAAAT
AAAACAGCAAGTACAAAAATGAGTAATAACCCCCAGTAGAGGCTGGTACGATTCAATTCAACATTTTGTTCGTTTGGGTTTGATTGTGTCGTAGCTCTAT
AATTCGGATTAGGTTTATCGTTGTATGAACTGCATTGCTGATATTGACCCCAAAAAAGAAACGGTAGGTACAGCTAGGCCGTGAACAGTCAACCATCGCA
CTGTAAAAATTGGATAGGTTCGATCTATGGTCATTGAAGCCTCCAAAAAAGATCTACTAAATTCATCGAGTTGTTCCAAAGAATCAAAACGGCCGGTGAT
TAATGGAATTCCTTGTCGGTTTTCTGTGAAATACTCGTTTGGCCGAGGGCTTCCAAACACATCGTAAGCTAAACCAGTGCTGACGAATAACCAACCCGCA
ATGAATAGGGAAGGTATAGTAATGCTATGAATGACCCAGTAGCGAATACTGGTAATAATATCAGCAAAAGAACGTTCTCCTGTGCTTCCAGACATGTTGA
GCACCACATA