Detailed information on CNT30355235


BLAST search results

BLAST vs Swiss-Prot:
sp|P48385|CHSY_CALCH, E-value = 4e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378024Lactuca sativaArabidopsis thaliana38.5332.382.02178forward
CNT30466778Lactuca sativaSaccharum spontaneum12.342087.7257forward

Expression of CNT30355235

Peptides detected in this lncRNA

>peptide 1 (93 aa)
VLRRLLSHLVNDEQHAGTGHVSVLAQYMSGGSHLLLLETKLELHLVQYRRTTGVGDPEDGVPVGYPQRRKCLCQSLLYVLRDQPWNILKEMKS*

>peptide 2 (46 aa)
MALVAASLPSLGTSTTTTSCLASREGAMYSQRLGFSLRNSSVKCMYR

>peptide 3 (90 aa)
SSADFFLISSMMNNTQALDMFPYSLNTCLVALIFSSLRPSLSSTWSSIAGPPGWAIQKMEFQSVIPKGENACVRAFSMFFEINPGTSLRR*

Sequence

>CNT30355235
GTCCTCCGCCGACTTCTTTCTCATCTCGTCAATGATGAACAACACGCAGGCACTGGACATGTTTCCGTACTCGCTCAATACATGTCTGGTGGCTCTCATC
TTCTCCTCCTTGAGACCAAGCTTGAGCTCCACCTGGTCCAGTATCGCCGGACCACCGGGGTGGGCGATCCAGAAGATGGAGTTCCAGTCGGTTATCCCCA
AAGGAGAAAATGCTTGTGTCAGAGCCTTCTCTATGTTCTTCGAGATCAACCCTGGAACATCCTTAAGGAGATGAAAAGTTAGCCCCACCTCCCTCAAATG
TCCGTTGGCCCCATTCTTTGATGGCTTTGGTCGCGGCTTCTTTACCGAGCTTGGGGACTTCGACAACCACCACGTCTTGTCTGGCGTCGAGGGAAGGAGC
CATGTACTCGCAAAGGTTGGGGTTCTCTTTGAGAAACTCCTCTGTCAAATGCATGTATCGTT