« Back to Lactuca sativa search


Detailed information on CNT30355197


BLAST search results

BLAST vs Swiss-Prot:
sp|A7Y3J6|YCF2_IPOPU, E-value = 5e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30508578Lactuca sativaSolanum lycopersicum18.6844.492.44119forward
CNT30627927Lactuca sativaDaucus carota19.7836.5295.24126forward

Expression of CNT30355197

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MSLKSNMLMNMFGGLETGGFTMPNNTNGDVVGSPINTTECDCGMNDSDVDMDKKKRSGLEKSFLLITSDQSIDY*

>peptide 2 (53 aa)
MTLLLRNEMFLEILAPSGLFVSICIRIPIHGSLGSRKKNKSIKPSLLTLFQIR*

>peptide 3 (41 aa)
RLNKIDGDRIELDKALKRPCRITTRNRAVASDRFVKVGLPT*

Sequence

>CNT30355197
TCCGATTAAATAAAATTGATGGAGATAGAATTGAATTAGATAAAGCGTTAAAGAGACCTTGCAGAATCACAACTAGAAATAGGGCAGTTGCTTCAGATAG
ATTTGTGAAGGTGGGCCTGCCAACATGAGCTTGAAATCAAATATGCTTATGAACATGTTTGGGGGACTTGAAACTGGTGGCTTCACAATGCCAAACAATA
CAAATGGAGATGTGGTGGGGTCGCCAATAAACACGACGGAGTGTGACTGTGGAATGAATGATTCCGATGTTGATATGGACAAAAAGAAACGAAGTGGCTT
AGAGAAATCTTTTTTGTTGATAACCTCAGACCAATCAATCGACTATTGATTAATACGTAATCGATTGAACACTACTTGAAAATGACTCTTCTGCTCAGAA
ACGAAATGTTCCTGGAAATTCTTGCTCCCAGTGGACTATTTGTATCTATATGCATCAGGATCCCGATTCATGGATCTCTTGGTTCGAGAAAAAAAAATAA
GAGTATCAAACCATCTCTTCTGACTCTTTTTCAAATTCGATAAATGTTGGTTGATCATATATTTCATTAGAGTTCCATGATTAAGAGTATCCTTTCCTAT
TTGATTCCTTTGAATTCCATATTTGAAGTTGCGACCG