CANTATAdb - search

Detailed information on CNT30355191

BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 6e-119

BLAST vs NONCODE:
NONBNAT005173, E-value = 1e-72

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30508893	Lactuca sativa	Solanum lycopersicum	65.33	42.24	86.02	422	forward
CNT30202642	Lactuca sativa	Helianthus annuus	45.67	52.96	90.17	295	forward
CNT30337333	Lactuca sativa	Cynara cardunculus	87.93	80.8	91.2	568	forward

Expression of CNT30355191

Peptides detected in this lncRNA

>peptide 1 (90 aa)
SLSGDKVCSIGPSIVSHRVSKWVNNLTEGSSTNSVTLNSTHQDHLGSPNGQDTLRMNQTRVSQVVKSTLTEDLGSSLEPHSLTELDTISG*

>peptide 2 (28 aa)
MELLSLPVRRKEKIEPWWRQPLMRVCLKL

>peptide 3 (29 aa)
MAHLQWITSSSRFLAKVSGSAESPAVSQP*

Sequence

>CNT30355191
CTCACTTTCCGGGGACAAAGTTTGTAGCATAGGACCAAGCATTGTTAGCCACAGGGTCAGCAAGTGGGTCAACAACCTCACCGAGGGGTCCTCCACCAAT
TCTGTAACCCTCAACAGCACCCATCAAGATCACTTGGGTAGCCCAAATGGCCAAGATACTCTGCGCATGAACCAAACTAGGGTTTCCCAAGTAGTCAAGT
CCACCCTCACTGAAGATTTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTTCTGGCTAAAAGCTCGGGGAAGACGCATCCTAGAG
CTCCAAGCATGGCCCACCTACAGTGGATAACTTCAAGTTCGCGGTTCTTGGCAAAGGTTTCGGGGTCGGCAGAAAGTCCGGCGGTGTCCCAGCCATAGTC
ACCGGGGAATTCGCCTGTAAGGTAGGTTGGGGACTCACCGGAGAATGGACCCAAGTACTTGACACGGTCTGGGCCATACCATGGGCTTCCAGATGCAACC
TGCTTGACTGTAGCCTTCCTCATAGAAACACGTCCATTCCCAGAAAGCTCAGAACCAGATGGAGCTACTTTCACTGCCTGTCCGGAGAAAGGAGAAGATA
GAGCCATGGTGGAGGCAGCCATTGATGAGAGTGTGTTTGAAATTAG