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Detailed information on CNT30355186


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01781|SAHH_PETCR, E-value = 2e-106

BLAST vs NONCODE:
NONBRAT004190, E-value = 7e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517189Lactuca sativaJuglans regia13.8626.2287.25102forward
CNT30702258Lactuca sativaQuercus lobata30.4347.6684.82224forward
CNT30375086Lactuca sativaArabidopsis thaliana37.538.4984.06276forward
CNT30619260Lactuca sativaSesamum indicum41.0328.3683.77302forward
CNT3020603Lactuca sativaCitrullus lanatus37.517.8384.06276forward
CNT3072357Lactuca sativaQuercus suber45.5232.6284.78335forward
CNT30380073Lactuca sativaManihot esculenta2517.8384.78184forward
CNT30402445Lactuca sativaBeta vulgaris32.4753.8382.85239forward
CNT30200315Lactuca sativaPisum sativum41.0358.5383.11302forward
CNT30505192Lactuca sativaNicotiana attenuata22.4229.281.21165forward
CNT30709695Lactuca sativaGlycine max22.1548.885.28163forward
CNT30543653Lactuca sativaBrassica napus20.9222.3287.01154forward
CNT3076654Lactuca sativaBrassica juncea40.6264.0384.62299forward
CNT30612558Lactuca sativaArabis alpina22.2843.584.15164forward
CNT30607325Lactuca sativaGossypium raimondii40.923.3382.72301forward
CNT30651401Lactuca sativaRosa chinensis17.1247.0185.71126forward
CNT30365203Lactuca sativaSorghum bicolor8.9730.786.3666forward
CNT30705212Lactuca sativaPrunus avium19.9739.9586.39147forward
CNT30723196Lactuca sativaLupinus angustifolius40.937.7784.05301forward

Expression of CNT30355186

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSRPSAKMMIPVLVSGKTHLSVCGLMVMRFTPG*

>peptide 2 (48 aa)
HELTTKIQQKQDLYPKTTKICVTQTFTLTPYSNQGLSTKKDQSVSSPH*

>peptide 3 (86 aa)
MSISLSKWPMLQTMALFFIFLMSETMMMSLFPTTSSKGRTWRPSMVAWRAQIGSISVTMTRAPACFIAAAQPFPTSPYPQTTATFPA

>peptide 4 (80 aa)
MADVADDGVVLHLPHVGDHDDVFVSDDVFQGEDLETFHGGLEGADWVDFCHDDTCSGLLHCGGATLSDVSVSADDCDLSGD

Sequence

>CNT30355186
CTCATGAATTAACAACCAAAATCCAACAAAAGCAAGACCTCTACCCAAAAACAACTAAAATTTGTGTTACACAAACCTTCACACTCACTCCTTATTCAAA
CCAAGGCCTTTCAACAAAAAAAGACCAATCAGTTTCTTCTCCCCACTAAACACCACCATTAAAATTCAACAAACAAAACTAAACCATATTCTTCTCCTCT
TCAAAATCCCCATCAAAAAGCAACAGTAGAACATAGACCTCCTTCTTGTACTTTCCGGTGGTTCTCTCCTTCCACAACTCAAGCTGAGCGATAACTTGGT
TGGTGAAAGAGCATGACATCACGAAACTAGGGTGGCCGGTGGCGCAACCCAAGTTCATGAGCCGACCTTCAGCCAAGATGATGATTCCGGTCTTGGTTTC
AGGGAAGACCCACCTGTCAGTTTGTGGTTTGATGGTGATGCGCTTCACACCTGGGTAGGTTTCAAGTCCGAGCATGTCGATTTCATTGTCGAAATGGCCG
ATGTTGCAGACGATGGCGTTGTTCTTCATCTTCCTCATGTCGGAGACCATGATGATGTCTTTGTTTCCGACGACGTCTTCCAAGGGGAGGACTTGGAGAC
CTTCCATGGTGGCTTGGAGGGCGCAGATTGGGTCGATTTCTGTCACGATGACACGTGCTCCGGCTTGCTTCATTGCGGCGGCGCAACCCTTTCCGACGTC
TCCGTATCCGCAGACGACTGCGACCTTTCCGGCGAT