Detailed information on CNT30354871


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549116Lactuca sativaIpomoea triloba22.0225.3587.572forward
CNT30513856Lactuca sativaJuglans regia29.0530.3586.3295forward
CNT30374824Lactuca sativaArabidopsis thaliana26.318.4587.2186forward
CNT30712585Lactuca sativaGlycine max19.2726.9290.4863forward
CNT3044720Lactuca sativaPrunus dulcis44.6522.1583.56146forward
CNT30159582Lactuca sativaPistacia vera18.9623.9490.3262forward
CNT3095762Lactuca sativaSolanum tuberosum22.944.1685.3375forward
CNT3082727Lactuca sativaBrassica juncea32.1122.2986.67105forward
CNT30612661Lactuca sativaArabis alpina40.0645.3383.97131forward
CNT30202937Lactuca sativaHelianthus annuus59.3347.0984.54194forward
CNT30704968Lactuca sativaPrunus avium38.2313.8684125forward
CNT30319296Lactuca sativaAsparagus officinalis22.9416.9385.3375forward
CNT3035626Lactuca sativaCucumis melo22.9413.398875forward
CNT3065055Lactuca sativaSelaginella moellendorffii20.818.4385.2968forward

Expression of CNT30354871

Peptides detected in this lncRNA

>peptide 1 (36 aa)
YRNMGVSCTPLGIGGREDSVNKDEGPKQDRSGFCNR*

>peptide 2 (33 aa)
QEHGSLVHSSWDRWQRRQCKQGRRSKAGSVWLL*

Sequence

>CNT30354871
TACAGGAACATGGGAGTCTCGTGCACTCCTCTTGGGATCGGTGGCAGAGAAGACAGTGTAAACAAGGACGAAGGTCCAAAGCAGGATCGGTCTGGCTTTT
GTAACCGATGACTGTTAAAACAGTGACGTAGAGGAAGAGGAGAGTGGCGACGAACTCGGCAATGAGTGCTCTGTAGAAGGACCATTTGGTGAGTTCGTCA
GCGTCAAAGAAGGGGGCAGGAGGTGGATCGTGGTAGTCCTTGGCGGTGTATTCGCCGCCGCCGCCGTGGTGCTCCGCCACTTCAACGTCTTTAGTCATGG
CTTTCAGGTCGAGAGAACTGAGAAGTG